Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq16023 122 7e-23 seq14499 113 4e-20 seq14413 104 2e-17 >seq16023 Length=121467 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||||||||||| ||||| || Sbjct 24387 CCACCACGGAGACGGAGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCG 24446 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| || || || | || || | |||||||||| || Sbjct 24447 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 24506 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || ||| | |||| | Sbjct 24507 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACT 24566 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| ||||| || || || ||||| || ||||| Sbjct 24567 TCGAGGGTAATGGTCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| || | |||||||||||| || ||||| ||||| || ||||| | ||||||| Sbjct 24861 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGACCGTCCTCG 24920 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 ||||||||||| || | || | ||||||||||||| || | ||||||||||| | Sbjct 24921 AGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGG 24980 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || || || || | | ||| || ||| | |||| |||| || |||||||| Sbjct 24981 ATTTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTCTTT 25040 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || ||||| || ||||| Sbjct 25041 CCCGTTAAAGTCTTCACAAAGATCTGCAT 25069 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| |||| || | || ||||| || || ||||| ||||| ||| Sbjct 25299 CCACCACGAAGCCTGAGGACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCC 25358 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || ||||||| || ||||| || || | || | |||||||||||| || Sbjct 25359 AAGGTACGGCCGTCCTCGAGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 25418 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||| || | | ||| || || | ||| Sbjct 25419 ATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 25478 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| |||||||| |||| |||||||| || |||||||| Sbjct 25479 TCCAAGGTAATCGTCTTGCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| || || || || || | | ||||| ||||| || || Sbjct 25101 GTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCATCCTCGAGCTGCTTTCCG 25160 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| ||| | || |||||||| ||||||| ||| Sbjct 25161 GCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCTTTA 25220 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| ||||| | ||| |||| ||| ||||||||||| || || ||| Sbjct 25221 ACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTT 25280 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 25281 TTAACGAAGATTTGCAT 25297 >seq14499 Length=662897 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| | |||||| || | ||| | || |||||||||||||| || || || || | Sbjct 224168 CCCCTC--AACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCTA 224225 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 ||| || | || || ||||||||||| || | ||||||||||||||||| || | Sbjct 224226 AGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAA 224285 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||||| ||||||| || || | ||| || || | |||| | Sbjct 224286 TTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCT 224345 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | |||||||||||||| || | ||||| || || |||||||| Sbjct 224346 CGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | || || | ||| | ||| ||||| || ||||| ||||| || Sbjct 223021 GTTTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATC 223080 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || || || || | || || |||||||| || || | || | ||||||||||||| Sbjct 223081 AGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGG 223140 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC-- 21122 || | ||||| || || ||||||| |||||| | | | ||||| ||| || Sbjct 223141 TGGGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTAT--CCGAGCTT 223198 Query 21123 TCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||| | |||||||| || ||||| || || || ||||| || ||||| Sbjct 223199 TCAACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | ||| || |||| || | ||| ||||||||||| || || || || || Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | || || || |||||||| || | |||||||||||||| || || Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| ||| || | ||| || || | ||| Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACC 224116 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || | ||||| || || |||||||| Sbjct 224117 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 >seq14413 Length=739167 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | |||||||||||||| ||||| ||||| || ||||| || | || Sbjct 402641 AGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCT 402700 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | ||||||||||||||||| || | ||||| ||||| Sbjct 402701 TCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCT 402760 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||| || | | | | || || ||| || | || ||||| Sbjct 402761 TGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTT 402820 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| |||||||| Sbjct 402821 TTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| || || || | | ||||| |||||||| || Sbjct 404157 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 404216 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || ||||||||||||||| || | || |||||||| |||||| || Sbjct 404217 GCAAAGATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 404276 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || | ||| || | || ||||||||||| || | ||| Sbjct 404277 ACATTATCGATGGTGTCTGAGCTCTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTT 404336 Query 21159 TTGACAAATATTTGCAT 21175 || || || |||||||| Sbjct 404337 TTCACGAAGATTTGCAT 404353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || | || || | || | ||| |||||||| || || || || || Sbjct 402166 GTTTCCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATC 402225 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 ||| || || | |||| || || ||||| || ||| | || |||||||||||||| Sbjct 402226 CGCAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGG 402285 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | |||||||||||| ||||| || || | | | | || || | || Sbjct 402286 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTTTC 402345 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| |||||| |||||||| || || || || || || || ||||| Sbjct 402346 AACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| || || || | | ||||| |||||||| || Sbjct 403568 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 403627 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | |||||||| ||||||||| || | || |||||||| ||||||| || Sbjct 403628 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 403687 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | |||| || | || || || || || || | || Sbjct 403688 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 403747 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 403748 TTGACGAAGATTTGCAT 403764 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| || || || | | ||||| |||||||| || Sbjct 403929 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 403988 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | |||||||| ||||||||| || | || |||||||| ||||||| || Sbjct 403989 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 404048 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | |||| || | || || || || || || | || Sbjct 404049 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 404108 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 404109 TTGACGAAGATTTGCAT 404125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||||||||||||||| ||||| ||||| || | || || | ||||| || ||||| || Sbjct 403111 AGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAGTACGGCCATCCTCAAGTTGTTTACC 403170 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| | || ||||| ||||||||| || | || |||||||| |||||| || Sbjct 403171 GGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTT 403230 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | || || | |||| || | ||| ||||| || || || | || Sbjct 403231 GACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTTACCAGTGAGAGT 403290 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 403291 CTTGACAAAGATTTGCAT 403308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | ||||| ||||| || ||||| ||||| || || || | | ||| Sbjct 402869 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGACCATCC 402928 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | |||||||||||||||||| || | || || || || Sbjct 402929 TCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATCT 402988 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||| || | | | | || || | ||| ||| | ||| ||||| Sbjct 402989 TGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTT 403048 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||||| ||||| |||||||| Sbjct 403049 TTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422164961247392