Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq16023 122 7e-23
seq14499 113 4e-20
seq14413 104 2e-17
>seq16023
Length=121467
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | |||||||||||||||||||| ||||| ||
Sbjct 24387 CCACCACGGAGACGGAGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCG 24446
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | ||||| ||||| || || || | || || | |||||||||| ||
Sbjct 24447 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 24506
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| ||||| | | | | || ||| | |||| |
Sbjct 24507 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACT 24566
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | |||||||||||| ||||| || || || ||||| || |||||
Sbjct 24567 TCGAGGGTAATGGTCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026
|||| || | |||||||||||| || ||||| ||||| || ||||| | |||||||
Sbjct 24861 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGACCGTCCTCG 24920
Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086
||||||||||| || | || | ||||||||||||| || | ||||||||||| |
Sbjct 24921 AGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGG 24980
Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146
|| || || || | | ||| || ||| | |||| |||| || ||||||||
Sbjct 24981 ATTTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTCTTT 25040
Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||| || || ||||| || |||||
Sbjct 25041 CCCGTTAAAGTCTTCACAAAGATCTGCAT 25069
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || |||||||| |||| || | || ||||| || || ||||| ||||| |||
Sbjct 25299 CCACCACGAAGCCTGAGGACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCC 25358
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| || ||||||| || ||||| || || | || | |||||||||||| ||
Sbjct 25359 AAGGTACGGCCGTCCTCGAGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 25418
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| ||| || | | ||| || || | |||
Sbjct 25419 ATACCTTCCTTATCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 25478
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||||| |||||||| |||| |||||||| || ||||||||
Sbjct 25479 TCCAAGGTAATCGTCTTGCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| || || || || || | | ||||| ||||| || ||
Sbjct 25101 GTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCATCCTCGAGCTGCTTTCCG 25160
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | |||||||||||| ||| | || |||||||| ||||||| |||
Sbjct 25161 GCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCTTTA 25220
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | ||| ||||| | ||| |||| ||| ||||||||||| || || |||
Sbjct 25221 ACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTT 25280
Query 21159 TTGACAAATATTTGCAT 21175
|| || || ||||||||
Sbjct 25281 TTAACGAAGATTTGCAT 25297
>seq14499
Length=662897
Score = 113 bits (124), Expect = 4e-20
Identities = 161/226 (71%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| | |||||| || | ||| | || |||||||||||||| || || || || |
Sbjct 224168 CCCCTC--AACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCTA 224225
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
||| || | || || ||||||||||| || | ||||||||||||||||| || |
Sbjct 224226 AGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAA 224285
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
||||||||||| ||||||| || || | ||| || || | |||| |
Sbjct 224286 TTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCT 224345
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| | |||||||||||||| || | ||||| || || ||||||||
Sbjct 224346 CGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
|||||| || || || | || || | ||| | ||| ||||| || ||||| ||||| ||
Sbjct 223021 GTTTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATC 223080
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
|| || || || | || || |||||||| || || | || | |||||||||||||
Sbjct 223081 AGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGG 223140
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGC-- 21122
|| | ||||| || || ||||||| |||||| | | | ||||| ||| ||
Sbjct 223141 TGGGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTAT--CCGAGCTT 223198
Query 21123 TCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||| | |||||||| || ||||| || || || ||||| || |||||
Sbjct 223199 TCAACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| | ||| || |||| || | ||| ||||||||||| || || || || ||
Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| || | || || || |||||||| || | |||||||||||||| || ||
Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| ||||||| ||| || | ||| || || | |||
Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACC 224116
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||| ||||| || | ||||| || || ||||||||
Sbjct 224117 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163
>seq14413
Length=739167
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | |||||||||||||| ||||| ||||| || ||||| || | ||
Sbjct 402641 AGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCT 402700
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| |||||||| || ||| | ||||||||||||||||| || | ||||| |||||
Sbjct 402701 TCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCT 402760
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| ||| || | | | | || || ||| || | || |||||
Sbjct 402761 TGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTT 402820
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||||||| | || || ||||| ||||||||
Sbjct 402821 TTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|||||||||||||| ||||| ||||| || || || | | ||||| |||||||| ||
Sbjct 404157 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 404216
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || ||||||||||||||| || | || |||||||| |||||| ||
Sbjct 404217 GCAAAGATTAGTCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 404276
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || || | ||| || | || ||||||||||| || | |||
Sbjct 404277 ACATTATCGATGGTGTCTGAGCTCTCTACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTT 404336
Query 21159 TTGACAAATATTTGCAT 21175
|| || || ||||||||
Sbjct 404337 TTCACGAAGATTTGCAT 404353
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
|||||| || || || | || || | || | ||| |||||||| || || || || ||
Sbjct 402166 GTTTCCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATC 402225
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
||| || || | |||| || || ||||| || ||| | || ||||||||||||||
Sbjct 402226 CGCAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGG 402285
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
||| | |||||||||||| ||||| || || | | | | || || | ||
Sbjct 402286 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTTTC 402345
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| |||||| |||||||| || || || || || || || |||||
Sbjct 402346 AACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|||||||||||||| ||||| ||||| || || || | | ||||| |||||||| ||
Sbjct 403568 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 403627
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | |||||||| ||||||||| || | || |||||||| ||||||| ||
Sbjct 403628 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 403687
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | | || || | |||| || | || || || || || || | ||
Sbjct 403688 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 403747
Query 21159 TTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 403748 TTGACGAAGATTTGCAT 403764
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|||||||||||||| ||||| ||||| || || || | | ||||| |||||||| ||
Sbjct 403929 GTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGAGCTGTTTACCG 403988
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | |||||||| ||||||||| || | || |||||||| ||||||| ||
Sbjct 403989 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 404048
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | | || || | |||| || | || || || || || || | ||
Sbjct 404049 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 404108
Query 21159 TTGACAAATATTTGCAT 21175
||||| || ||||||||
Sbjct 404109 TTGACGAAGATTTGCAT 404125
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
||||||||||||||| ||||| ||||| || | || || | ||||| || ||||| ||
Sbjct 403111 AGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAGTACGGCCATCCTCAAGTTGTTTACC 403170
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
||| | || ||||| ||||||||| || | || |||||||| |||||| ||
Sbjct 403171 GGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTGGCCTT 403230
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
|| | | | || || | |||| || | ||| ||||| || || || | ||
Sbjct 403231 GACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTTACCAGTGAGAGT 403290
Query 21158 TTTGACAAATATTTGCAT 21175
|||||||| ||||||||
Sbjct 403291 CTTGACAAAGATTTGCAT 403308
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| || | ||||| ||||| || ||||| ||||| || || || | | |||
Sbjct 402869 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGACCATCC 402928
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| |||||||| || || | |||||||||||||||||| || | || || || ||
Sbjct 402929 TCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATCT 402988
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||| || | | | | || || | ||| ||| | ||| |||||
Sbjct 402989 TGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGGTT 403048
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || || | ||||| ||||| ||||||||
Sbjct 403049 TTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422164961247392
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