Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14499 95.1 1e-14 seq14413 89.7 4e-13 seq16938 86.0 5e-12 >seq14499 Length=662897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||||||||| || ||| || | || Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || ||| || || || ||||| | || |||||| Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||| || ||||||||| | |||||| | || | |||||||||||| Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| || ||||| ||| |||| | | ||| |||| || Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||| | || ||||| |||||||| ||| ||| | | Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||| || || || ||||| | || ||| || Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||| || |||||||| | |||||| | || | |||||||||||| Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||||||||| || || || || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCA 224189 >seq14413 Length=739167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || ||||| ||||| || |||||| ||| ||| | || Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| || || ||||| | ||| ||| || Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 402277 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || |||||| | ||||| ||| | || ||||||||| Sbjct 402276 CAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAAT 402217 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 || || ||||| |||||||||||| Sbjct 402216 ATCCAGAAGGAGTCTACTCTTCAC 402193 >seq16938 Length=276168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | || |||||||| ||||| |||||||| || || ||| | ||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||| | ||||||||||| || || || |||||||||||||| Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCA 257053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410705119397168