Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 95.1 1e-14
seq14413 89.7 4e-13
seq16938 86.0 5e-12
>seq14499
Length=662897
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | ||||| | || ||||||||||| || ||| || | ||
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || | || ||| || || || ||||| | || ||||||
Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||||||||||| || ||||||||| | |||||| | || | ||||||||||||
Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984
Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|| |||||||| || ||||| ||| |||| | | ||| |||| ||
Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
|||||||| ||| | ||||| | || ||||| |||||||| ||| ||| | |
Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| ||| || || || ||||| | || ||| ||
Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||||||||||| || |||||||| | |||||| | || | ||||||||||||
Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212
Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237
||||||||||| || || || ||
Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCA 224189
>seq14413
Length=739167
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | || || ||||| ||||| || |||||| ||| ||| | ||
Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | | | | ||| || ||| || || ||||| | ||| ||| ||
Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 402277
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|| ||||| |||||||| || |||||| | ||||| ||| | || |||||||||
Sbjct 402276 CAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAAT 402217
Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238
|| || ||||| ||||||||||||
Sbjct 402216 ATCCAGAAGGAGTCTACTCTTCAC 402193
>seq16938
Length=276168
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| ||||| ||| | || |||||||| ||||| |||||||| || || ||| | |||
Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| || ||| | ||||||||||| || || || ||||||||||||||
Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCA 257053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410705119397168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |