Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq14413 131 3e-25 seq14499 116 6e-21 seq16577 114 2e-20 seq16938 93.3 6e-14 >seq14413 Length=739167 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || |||||||| || ||| |||| |||| ||| | Sbjct 402624 ATGCAGATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTCTAGAAGTTGAGAGCTCA 402565 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| ||||| || |||||||| || || ||||| || || || || Sbjct 402564 -GACACCATTGACAATGTAAAAGCTAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCA 402506 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || |||||||||||||| | || ||| | || || | | |||||| || Sbjct 402505 GCAACGTTTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTGCAGATTACAA 402446 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||| | || |||| ||||| | || |||||||| Sbjct 402445 CATTCAGAAGGAATCAACTCTTCACCTGGTGCTACGTCTCCGTGGTGGTAT 402395 Score = 113 bits (124), Expect = 7e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || || || ||||| || || |||| |||| ||| | Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || |||||||||||||| ||||| || || || || Sbjct 403020 -GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCA 402962 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| || || || ||||| | |||||| |||| || ||| || || || Sbjct 402961 GCAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCTAGCTGACTACAA 402902 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || ||||| || | || ||||| | ||||| |||||||||| ||| || Sbjct 402901 CATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAAATTT 402843 >seq14499 Length=662897 Score = 116 bits (128), Expect = 6e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || || |||| ||||| Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | ||| || || ||||||||||||||||| ||||| || || Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || || || |||||||| | || ||| | || || | | ||||||||| Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || ||| | ||| | ||| | ||| | || ||||| Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCATCTTGTTCTTCGTCTTCGTGGTGG 223025 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || || || |||||||| || || |||| | || ||| Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTC- 223877 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || |||||||| |||||||| || ||||| ||||| Sbjct 223876 TGACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCA 223817 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || || || || || ||||| | ||||| |||| || | | ||| || || Sbjct 223816 ACAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAA 223757 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| |||||||| | ||||| || | |||||| |||||||||| Sbjct 223756 CATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGGTAT 223706 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || ||||| || || |||| ||||| Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| ||||| || || ||||| ||||||||||| ||||| || || Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || || || |||||||| | || ||| | || || |||| || || ||| Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTACAAT 223300 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || |||||| | || |||| | ||| | || |||||||| Sbjct 223299 ATACAAAAGGAGTCAACTCTTCACCTGGTCCTGCGTCTCCGTGGTGGTAT 223250 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || || | || || || || |||||||| |||||| | || ||||| || | Sbjct 223707 ATGCAGATTTTCGTCAAAACCCTTACTGGCAAAACCATAACTTTGGAAGTTGAAAGCTCA 223648 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| |||| || || ||||| ||||||||||| ||||| || || Sbjct 223647 -GACACCATCGATAATGTAAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCGGACCA 223589 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || || || |||||||| | || ||| | || || | | ||||| || Sbjct 223588 GCAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTACAA 223529 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || ||||| | || |||| | ||| | || |||||||| Sbjct 223528 TATTCAGAAGGAGTCAACACTTCACCTGGTCCTGCGTCTTCGTGGTGGTAT 223478 Score = 89.7 bits (98), Expect = 8e-13 Identities = 171/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || || || ||||| || || ||| | ||| | || ||| Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || ||||| || ||||| || || || || || Sbjct 224331 -GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCA 224273 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| || || || ||||| | || ||| | || || |||| ||||| || Sbjct 224272 GCAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAA 224213 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||||||| || ||||| | ||| | ||| | | || | |||||||| ||| || Sbjct 224212 TATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGGTATGCAAATCTT 224153 Query 124777 CATAAAAA 124784 | |||||| Sbjct 224152 CGTAAAAA 224145 >seq16577 Length=433012 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| || ||||| |||||| | || | ||| || Sbjct 33853 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCATCA 33794 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| | ||| || ||||| ||||||||||| || ||||| ||||| Sbjct 33793 GATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGATCAG 33734 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || ||||||||| | || || |||| || | | ||||| || Sbjct 33733 CAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTACAAC 33674 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || ||||| || | ||| | ||| | ||| |||| |||||| Sbjct 33673 ATCCAGAAGGAATCGACGCTTCATCTCGTTCTTCGTCTACGTGGTGGT 33626 >seq16938 Length=276168 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| |||||||||||||||||||| || || || ||||| || || ||| || Sbjct 257165 CAGGACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTA 257106 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT- 124747 || ||| | ||||| | | ||||| || || || |||||||| ||| | ||| | || Sbjct 257105 GAAGATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTC 257046 Query 124748 TTTACGTTTACGAGGTGG 124765 || | | ||| ||||||| Sbjct 257045 TTGAGGCTTA-GAGGTGG 257029 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| |||||||||||||||||||| || || || ||||| || || ||| || Sbjct 249655 CAGGACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTA 249714 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGT- 124747 || ||| | ||||| | | ||||| || || || ||||| || ||| | ||| | || Sbjct 249715 GAAGATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTC 249774 Query 124748 TTTACGTTTACGAGGTGG 124765 || | | ||| ||||||| Sbjct 249775 TTGAGGCTTA-GAGGTGG 249791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755283076121600