Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 114 2e-20
seq16938 100 4e-16
seq16577 95.1 2e-14
>seq14499
Length=662897
Score = 114 bits (126), Expect = 2e-20
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| | | || | ||| | ||| || ||||| ||||||||||| |
Sbjct 223023 TTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAG 223082
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
|||||| | || ||| || | |||||||| || || |||||||| ||||| ||||| |
Sbjct 223083 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 223142
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| || |||||||||||||| |||||| || ||||| |
Sbjct 223143 GGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAA 223202
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||||| ||| || |||||||| || ||||| |||| || || |||||
Sbjct 223203 CTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251
>seq16938
Length=276168
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||||||||| || || || | ||| | |||||||||||| || || |||||
Sbjct 257026 GTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCG 257085
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| ||||||| ||| |||| ||| || || ||||| || | ||| || ||||| ||
Sbjct 257086 GCAAGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGT 257145
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || || ||||| || ||
Sbjct 257146 GGTATACCCTCTTTGTCCTG 257165
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||||||||| || || || | ||| | |||||| ||||| || || |||||
Sbjct 249794 GTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCC 249735
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| ||||| | ||| |||| ||| || || ||||| || | ||| || ||||| ||
Sbjct 249734 GCAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGT 249675
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || || ||||| || ||
Sbjct 249674 GGTATACCCTCTTTGTCCTG 249655
>seq16577
Length=433012
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/185 (69%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| || ||||| | |||||| | | || || | |||||||||||| |||||||| | |
Sbjct 33672 ATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGT 33731
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215
||||||||||| ||||||||||||||||| || |||
Sbjct 33732 TGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTA 33791
Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275
||||| ||| ||||| || || || |||||||| |||| ||||| | ||| || |||
Sbjct 33792 TCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 33851
Query 146276 ATTTT 146280
|| ||
Sbjct 33852 ATCTT 33856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743356206807040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |