Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14499 114 2e-20 seq16938 100 4e-16 seq16577 95.1 2e-14 >seq14499 Length=662897 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| | ||| || ||||| ||||||||||| | Sbjct 223023 TTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAG 223082 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||| | || ||| || | |||||||| || || |||||||| ||||| ||||| | Sbjct 223083 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 223142 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||||||||| |||||| || ||||| | Sbjct 223143 GGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATCCGAGCTTTCAA 223202 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||||| ||| || |||||||| || ||||| |||| || || ||||| Sbjct 223203 CTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 >seq16938 Length=276168 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || || || | ||| | |||||||||||| || || ||||| Sbjct 257026 GTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCG 257085 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||||| ||| |||| ||| || || ||||| || | ||| || ||||| || Sbjct 257086 GCAAGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGT 257145 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || ||||| || || Sbjct 257146 GGTATACCCTCTTTGTCCTG 257165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||||||||| || || || | ||| | |||||| ||||| || || ||||| Sbjct 249794 GTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCC 249735 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| |||| ||| || || ||||| || | ||| || ||||| || Sbjct 249734 GCAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGT 249675 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || ||||| || || Sbjct 249674 GGTATACCCTCTTTGTCCTG 249655 >seq16577 Length=433012 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/185 (69%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||| | |||||| | | || || | |||||||||||| |||||||| | | Sbjct 33672 ATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGT 33731 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||| ||||||||||||||||| || ||| Sbjct 33732 TGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTA 33791 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| ||| ||||| || || || |||||||| |||| ||||| | ||| || ||| Sbjct 33792 TCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 33851 Query 146276 ATTTT 146280 || || Sbjct 33852 ATCTT 33856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743356206807040