Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq16023 93.3 3e-14
seq14413 82.4 5e-11
>seq16023
Length=121467
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/232 (70%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || ||||| || |||||||| | ||| || ||||| ||||||||||| | |
Sbjct 25527 CCACCACGGAGCCTGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 25586
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| ||| | || || | |||||| || || || || | | ||||| || |||
Sbjct 25587 AATGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGATCCGGGGGA 25646
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338
| | |||||| || ||||| |||||| | |||||| | ||| || |||
Sbjct 25647 ATTCCCTCCTTATCCTGGATCTTA-GCTTTAAC---GTTATCGATTGTGTCAGAGCTTTC 25702
Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || | |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 25703 CACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 25754
>seq14413
Length=739167
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || ||| ||||| ||||||||||| | || ||| | ||
Sbjct 402869 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGACCATCC 402928
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295
|| | ||| || || ||||| || || | ||||||||| || || || |||| || |
Sbjct 402929 TCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCT--TTAT 402986
Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
| ||||| ||||| | || | | || | || | || || || | ||||||
Sbjct 402987 CTTGAATCTTA-GCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATG 403045
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || |||||||||||||||||||| |||||
Sbjct 403046 GTTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322999897598720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |