Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq16023 93.3 3e-14 seq14413 82.4 5e-11 >seq16023 Length=121467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||||||| | ||| || ||||| ||||||||||| | | Sbjct 25527 CCACCACGGAGCCTGAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 25586 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | |||||| || || || || | | ||||| || ||| Sbjct 25587 AATGTTCGGCCATCCTCTAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGATCCGGGGGA 25646 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC-GA---TTC 34338 | | |||||| || ||||| |||||| | |||||| | ||| || ||| Sbjct 25647 ATTCCCTCCTTATCCTGGATCTTA-GCTTTAAC---GTTATCGATTGTGTCAGAGCTTTC 25702 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | |||||||| || ||||||||||||||||| |||||||||||| Sbjct 25703 CACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATC 25754 >seq14413 Length=739167 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || ||| | || Sbjct 402869 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGACCATCC 402928 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295 || | ||| || || ||||| || || | ||||||||| || || || |||| || | Sbjct 402929 TCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCT--TTAT 402986 Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 | ||||| ||||| | || | | || | || | || || || | |||||| Sbjct 402987 CTTGAATCTTA-GCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATG 403045 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||||||||||||||| ||||| Sbjct 403046 GTTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322999897598720