Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq14462 134 1e-26 >seq14462 Length=746139 Score = 134 bits (148), Expect = 1e-26 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 |||||| ||||| ||||| | |||||||| | ||||||||||| || || || || Sbjct 137939 ACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAG 137880 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGGCAAATGAACCAGAAAAG 16351 || ||||| || ||||||||||||| ||| || || ||| | || | ||| || ||| Sbjct 137879 TCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACT--ACCGGAGAAG 137822 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || ||||||||||| ||| || || || | ||||| | | ||| | | | Sbjct 137821 AAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGAT---CCG 137765 Query 16412 tctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471 || ||||| | | ||||| | ||||| | |||||| || | || ||||| Sbjct 137764 TCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCG 137705 Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 ||| | || | | |||||||| | || || || ||||| | |||| ||||||| Sbjct 137704 CGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATAC 137645 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCA 16578 || || |||||||||||||| || || || ||||| || || |||||| Sbjct 137644 ATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCA 137597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462406131003200