Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq16023 131 1e-25 seq14413 98.7 8e-16 seq14499 96.9 3e-15 seq12257 82.4 6e-11 >seq16023 Length=121467 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || ||| ||||||||| |||||||||||| || ||| |||| Sbjct 24858 AAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTACGACCGTCC 24917 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || ||||| ||||| | ||| ||||| || || | ||| ||||||||| Sbjct 24918 TCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCCTTGTCC 24977 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| ||| || | | | |||| | ||||||||||| || || ||| Sbjct 24978 TGGATTTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATGGTC 25037 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| | ||||||||||||||| ||||| Sbjct 25038 TTTCCCGTTAAAGTCTTCACAAAGATCTGCAT 25069 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| ||||| ||| ||||| ||||||||||| || || |||| || Sbjct 25317 ACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCCTCG 25376 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || ||||| ||||||| ||| ||||| ||||| | ||| ||||| ||| Sbjct 25377 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 25436 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | || |||| || | | | | |||| | ||| ||||||| |||||||||||| Sbjct 25437 A-TCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTAATCGTCTT 25495 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||| || || || || ||||||||||| Sbjct 25496 GCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||| || || ||| | || Sbjct 25086 AAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCATCC 25145 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||||| ||| ||||| || || | ||||||||||| Sbjct 25146 TCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCT 25205 Query 45245 GCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | | ||||||| | || | | | | | || | |||||||||| ||| || || Sbjct 25206 TGGA-TCTTTGCTTTAACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGGT 25264 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||||||||| || || || |||||||||||| Sbjct 25265 CTTGCCCGTCAAGGTTTTAACGAAGATTTGCATG 25298 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| |||||||||||||| || |||| | || || Sbjct 24405 ACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCA 24464 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| ||||| | ||| ||||||||| Sbjct 24465 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 24524 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||||| || | |||||| ||||| Sbjct 24525 ATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGGTCTTA 24584 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| ||||| || ||||| Sbjct 24585 CCGGTCAAGGTCTTAACAAAAATCTGCAT 24613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGT 45185 ||||| || || || ||||||||| |||||||||||| | ||| |||| | || | Sbjct 24633 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCTAAAGT--GCGACCATCCT 24690 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || || || |||||||| || | || || ||||| || || | ||||| |||||| Sbjct 24691 CAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATTCCCTCTTTGTCCT 24750 Query 45246 CAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 | |||| |||| | || | | | | |||| | ||| ||||| | ||| || || Sbjct 24751 GGA-TTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTT 24809 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| || || || ||||| ||||| Sbjct 24810 TTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841 >seq14413 Length=739167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | |||||||| || ||| |||||||| ||||||||||| Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || ||||| |||||||| || | | ||| ||||| ||||| Sbjct 402914 AGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGG 402973 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| || || ||| || || || | | | |||| | ||| || Sbjct 402974 ATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACT 403033 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || || ||||| ||||||||||||||||| Sbjct 403034 TCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTT 45191 ||| || ||| |||||| || ||||||||||| | | | | || | || || |||| Sbjct 403105 GTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAGTA-CGGCCATCCTCAAGTT 403163 Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 |||| ||||| || || | | || ||||| ||||| | |||||||||||| || | Sbjct 403164 GTTTACCGGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCT 403223 Query 45252 TTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||| || | | | ||||| | ||||||||| | ||| || || || || | Sbjct 403224 TGGCCTTGACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTTACCAG 403283 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||| |||||||||||||| Sbjct 403284 TGAGAGTCTTGACAAAGATTTGCAT 403308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||| || || ||||||||||| || ||| | || || || || Sbjct 403333 GTGGAGTGTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTG 403392 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| ||||| || || | | || ||||| ||||| | |||||||||||| || || Sbjct 403393 TTTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTT 403452 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | ||||| | ||||||||| | || || || || || || Sbjct 403453 TGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGT 403512 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| || ||||||||||| Sbjct 403513 GAGAGTCTTGACGAAGATTTGCAT 403536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| || || | || || | Sbjct 403557 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGA 403616 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| ||||| || || | | || ||||| ||||| | |||||||||||| | Sbjct 403617 GCTGTTTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGA 403676 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | ||||| | ||||||||| | || || || || | Sbjct 403677 TCTTTGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTAC 403736 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || |||||||| || ||||||||||| Sbjct 403737 CAGTGAGAGTCTTGACGAAGATTTGCAT 403764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| |||||| || ||||||||||| || || | || || | Sbjct 403918 CAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCAAGAGTACGTCCATCCTCGA 403977 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| ||||| || || | | || ||||| ||||| | |||||||||||| | Sbjct 403978 GCTGTTTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGA 404037 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | ||| ||| || | | | ||||| | ||||||||| | || || || || | Sbjct 404038 TCTTTGCCTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTAC 404097 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || |||||||| || ||||||||||| Sbjct 404098 CAGTGAGAGTCTTGACGAAGATTTGCAT 404125 >seq14499 Length=662897 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGT-T 45168 ||||| ||||| || | || | || || || |||||| ||||| ||||| ||| | Sbjct 224165 CCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 224224 Query 45169 CAGTT--GGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | ||| ||| ||| || ||||| |||||||| || | | ||| ||||| ||| Sbjct 224225 AAGGTACGGCCATCTTCG---AGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGA 224281 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | || |||||||| || ||| ||| || | | | |||| | |||| Sbjct 224282 GGAATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCC 224341 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| | ||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 224342 ACCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 >seq12257 Length=1143886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| | | |||||||| ||||| |||||||| |||||||| || Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | |||| |||| ||| ||||||||||| |||||||| || || || || || Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312 Query 45230 ACACCCTCCTTGTCC 45244 | || ||||||||| Sbjct 1016313 ATGCCTTCCTTGTCC 1016327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394987028104552