Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq14499 105 5e-18 seq14413 82.4 6e-11 >seq14499 Length=662897 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | ||||| |||||||| ||||| ||||||||||| || | || || || Sbjct 223723 AAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTACGACCGTC 223782 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||||| || || |||| |||||||||||||| || | ||||| || || Sbjct 223783 CTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGGATCCCTTCTTTGTC 223842 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||||| | ||| |||||| | |||| ||| | ||||||| | Sbjct 223843 TTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCTAGGGTGATGGT 223902 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||| | ||||| || || |||||||| Sbjct 223903 TTTGCCGGTGAGAGTTTTGACGAAGATTTGCAT 223935 >seq14413 Length=739167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || ||||| || || ||||||||||| || | || || ||| Sbjct 402868 AAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGACCATC 402927 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||||| || || |||||||||| || || ||| || | || || ||||| Sbjct 402928 CTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGGGATACCCTCTTTATC 402987 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | || ||||| | ||| ||||| | ||| ||| | ||||||| Sbjct 402988 TTGAATCT-TAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTGATGG 403046 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | ||||| ||||| |||||||| Sbjct 403047 TTTTACCAGTGAGAGTTTTCACAAAGATTTGCAT 403080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379259338954440