Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 199 4e-46
seq17130 113 4e-20
seq14499 105 6e-18
seq14413 100 3e-16
seq12257 98.7 9e-16
>seq14462
Length=746139
Score = 199 bits (220), Expect = 4e-46
Identities = 414/599 (69%), Gaps = 28/599 (5%)
Strand=Plus/Plus
Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599
||||| ||||| |||||| |||| ||| | || ||| | |||||||| ||||| || ||
Sbjct 137359 TTTGT-ATGTTCCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCG 137417
Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGA-GCGATTGGGATTCCCT 57658
||||||||||| | ||| ||||| || || || |||| | || |||||||||| |
Sbjct 137418 TCGTTTTGGACTGCCGAGGAAGTCGATCTATCACAGGA-CGGACGCGATTGGGAGAATTT 137476
Query 57659 CAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGG 57718
|| || || || | || || || || || || || || |||||||| || |||||
Sbjct 137477 AAACGACGGCGAACGACACTTCATCAAGCATGTCTTAGCCTTCTTCGCCGCCTCTGATGG 137536
Query 57719 TATTGTTAACGAGAAT-TTG---GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGG 57774
|| || |||||| ||| |||| || | | || || || || ||||||
Sbjct 137537 CATCGTCTTGGAGAATCTTGCATCTCGATTCATGTCC----GATGTTCAGGTATCGGAGG 137592
Query 57775 CGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833
|| | |||||| |||||||||||| | || ||||| || | ||||| || ||||||
Sbjct 137593 CGCG-TGCTTTCTACGGATTTCAAATCGCGATTGAGAATATTCATTCGGAGATGTATAGT 137651
Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGTTCAACGC 57889
||||| | ||||| ||| | ||||||||| | ||||| ||| || || |||
Sbjct 137652 CTACTTCTTGATACCTACATCAAGGACAACAA--AGAAA--GAGACCATCTCTTTCGCGC 137707
Query 57890 GATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948
||||||||||| |||| | | |||||||| || | ||| | || | ||||| |
Sbjct 137708 AATCGAAACAAT-CCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGA-- 137764
Query 57949 GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008
|| | || || || ||| | | | || |||||| ||| |||||||| ||||
Sbjct 137765 -CGGATCTCAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTCT 137823
Query 58009 TTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067
| || || || || ||| | || || ||| | || ||||| || || ||||| || ||
Sbjct 137824 TCTCCGGTAGTTTCTGC-TCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTC 137882
Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
|| || ||||||||| || || || ||||| || |||||| ||||| || || ||
Sbjct 137883 ACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCCTCCATTGCGATTTCGCTTGTCT 137941
>seq17130
Length=165301
Score = 113 bits (124), Expect = 4e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || ||||| || || ||||| |||||| | || |||||| |
Sbjct 19896 AAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCA 19837
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||| | |||||| || || ||||||||||| | || || |||
Sbjct 19836 TCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGAC 19777
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368
||||| || |||| ||||| || ||||| | |||||| | ||| || ||| |||||
Sbjct 19776 CAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGAC-ATTAGCTGATTA 19718
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || ||||| ||||||||| | || ||
Sbjct 19717 CAATATCCAGAAGGAATCAACTCTTCATTTAGTTCT 19682
>seq14499
Length=662897
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || ||||| || ||||| || || || |||| || || |||
Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| || ||| | ||||||||||| | || || |||||
Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGAATTCCTCCAGACCA 224273
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || ||||| ||||||||| | ||||| || | |||||| ||
Sbjct 224272 GCAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAA 224213
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| || || || || ||||| || || || ||||||| ||||
Sbjct 224212 TATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGGTA 224163
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| |||||||| || || || |||||||| ||||| |||| ||||| ||
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | || ||| || ||| | ||||||||||| | || || || ||
Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGA-TCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || ||||| |||||||| | ||||| || | |||||| ||
Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || ||||| || |||| ||||| | || || ||||
Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGGTA 223935
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || ||||| |||| || ||||| || || | || |||||| ||
Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | || ||| || ||| | || || ||||| | || || |||||
Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGA-TCCAAGATAAAGAAGGTATCCCACCGGACCA 223133
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||| || |||||| | ||||| |||| | ||||||||
Sbjct 223132 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAA 223073
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||| ||||| |||||||||||||| || |||
Sbjct 223072 TATTCAGAAAGAGTCGACTCTTCATCTTGTTCTT 223039
>seq14413
Length=739167
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || |||||||||||| |||||||||| || || ||| | || |||||| ||
Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | | ||| | ||||||||||||| | || || |||||
Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 402278
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || || ||||| | |||||| | ||| | ||||| ||
Sbjct 402277 GCAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAA 402218
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || || || || |||||||| || || |||
Sbjct 402217 TATCCAGAAGGAGTCTACTCTTCACCTTGTTCTT 402184
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| |||||||| || || |||||||| ||||| | || ||||| |||
Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | || ||||| ||||| | || || ||||||
Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || || |||||| | ||||| || | || || |||
Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || || ||||| || ||| | || | || ||||
Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTGCTTCGTCTCCGTGGTGGTA 402624
>seq12257
Length=1143886
Score = 98.7 bits (108), Expect = 9e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| |||||||| || || || || || || || |||||| | || |||||| |
Sbjct 1016423 AAAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTAGAGGTTGAATC 1016364
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| || | |||| | || ||| | || ||||||||||||| | || || ||
Sbjct 1016363 CTCTGATACGATCGATAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGA 1016304
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
||||| || | || ||||| || || || ||||| ||| || ||| | |||||
Sbjct 1016303 TCAGCAACGGTTGATCTTCGCCGGAAAGCAATTGGAGGACGGTAGAACTCTCGCGGATTA 1016244
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||| || || ||||| || ||||| |||| || | |||| || |||
Sbjct 1016243 CAACATCCAGAAGGAATCAACGCTTCACTTGGTTCTCCGTTTGAGAGGAGGT 1016192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445664364071040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |