Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14462 199 4e-46 seq17130 113 4e-20 seq14499 105 6e-18 seq14413 100 3e-16 seq12257 98.7 9e-16 >seq14462 Length=746139 Score = 199 bits (220), Expect = 4e-46 Identities = 414/599 (69%), Gaps = 28/599 (5%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 ||||| ||||| |||||| |||| ||| | || ||| | |||||||| ||||| || || Sbjct 137359 TTTGT-ATGTTCCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCG 137417 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGA-GCGATTGGGATTCCCT 57658 ||||||||||| | ||| ||||| || || || |||| | || |||||||||| | Sbjct 137418 TCGTTTTGGACTGCCGAGGAAGTCGATCTATCACAGGA-CGGACGCGATTGGGAGAATTT 137476 Query 57659 CAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGG 57718 || || || || | || || || || || || || || |||||||| || ||||| Sbjct 137477 AAACGACGGCGAACGACACTTCATCAAGCATGTCTTAGCCTTCTTCGCCGCCTCTGATGG 137536 Query 57719 TATTGTTAACGAGAAT-TTG---GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGG 57774 || || |||||| ||| |||| || | | || || || || |||||| Sbjct 137537 CATCGTCTTGGAGAATCTTGCATCTCGATTCATGTCC----GATGTTCAGGTATCGGAGG 137592 Query 57775 CGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | |||||| |||||||||||| | || ||||| || | ||||| || |||||| Sbjct 137593 CGCG-TGCTTTCTACGGATTTCAAATCGCGATTGAGAATATTCATTCGGAGATGTATAGT 137651 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA----CTGTTCAACGC 57889 ||||| | ||||| ||| | ||||||||| | ||||| ||| || || ||| Sbjct 137652 CTACTTCTTGATACCTACATCAAGGACAACAA--AGAAA--GAGACCATCTCTTTCGCGC 137707 Query 57890 GATCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 ||||||||||| |||| | | |||||||| || | ||| | || | ||||| | Sbjct 137708 AATCGAAACAAT-CCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGA-- 137764 Query 57949 GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 || | || || || ||| | | | || |||||| ||| |||||||| |||| Sbjct 137765 -CGGATCTCAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTCT 137823 Query 58009 TTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTG 58067 | || || || || ||| | || || ||| | || ||||| || || ||||| || || Sbjct 137824 TCTCCGGTAGTTTCTGC-TCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTC 137882 Query 58068 ACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || ||||||||| || || || ||||| || |||||| ||||| || || || Sbjct 137883 ACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCCTCCATTGCGATTTCGCTTGTCT 137941 >seq17130 Length=165301 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || ||||| |||||| | || |||||| | Sbjct 19896 AAGATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCA 19837 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | |||||| || || ||||||||||| | || || ||| Sbjct 19836 TCTGATACAATCGACAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGAC 19777 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTA 31368 ||||| || |||| ||||| || ||||| | |||||| | ||| || ||| ||||| Sbjct 19776 CAGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGAC-ATTAGCTGATTA 19718 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| ||||||||| | || || Sbjct 19717 CAATATCCAGAAGGAATCAACTCTTCATTTAGTTCT 19682 >seq14499 Length=662897 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || ||||| || || || |||| || || ||| Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||| | || || ||||| Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGAATTCCTCCAGACCA 224273 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| ||||||||| | ||||| || | |||||| || Sbjct 224272 GCAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAA 224213 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || || ||||| || || || ||||||| |||| Sbjct 224212 TATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGGTA 224163 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||| || || || |||||||| ||||| |||| ||||| || Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| || ||| | ||||||||||| | || || || || Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGA-TCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| |||||||| | ||||| || | |||||| || Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||||| || |||| ||||| | || || |||| Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGGTA 223935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || ||||| || || | || |||||| || Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || ||| | || || ||||| | || || ||||| Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGA-TCCAAGATAAAGAAGGTATCCCACCGGACCA 223133 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||| || |||||| | ||||| |||| | |||||||| Sbjct 223132 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAA 223073 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||| |||||||||||||| || ||| Sbjct 223072 TATTCAGAAAGAGTCGACTCTTCATCTTGTTCTT 223039 >seq14413 Length=739167 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||| |||||||||| || || ||| | || |||||| || Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||||||| | || || ||||| Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 402278 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || ||||| | |||||| | ||| | ||||| || Sbjct 402277 GCAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAA 402218 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || |||||||| || || ||| Sbjct 402217 TATCCAGAAGGAGTCTACTCTTCACCTTGTTCTT 402184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| |||||||| || || |||||||| ||||| | || ||||| ||| Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||| ||||| | || || |||||| Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| | ||||| || | || || ||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || ||||| || ||| | || | || |||| Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTGCTTCGTCTCCGTGGTGGTA 402624 >seq12257 Length=1143886 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| || || || || || || || |||||| | || |||||| | Sbjct 1016423 AAAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACAATCACCCTAGAGGTTGAATC 1016364 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | |||| | || ||| | || ||||||||||||| | || || || Sbjct 1016363 CTCTGATACGATCGATAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGA 1016304 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| || | || ||||| || || || ||||| ||| || ||| | ||||| Sbjct 1016303 TCAGCAACGGTTGATCTTCGCCGGAAAGCAATTGGAGGACGGTAGAACTCTCGCGGATTA 1016244 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || ||||| || ||||| |||| || | |||| || ||| Sbjct 1016243 CAACATCCAGAAGGAATCAACGCTTCACTTGGTTCTCCGTTTGAGAGGAGGT 1016192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445664364071040