Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 217 2e-51
seq14680 109 7e-19
>seq14462
Length=746139
Score = 217 bits (240), Expect = 2e-51
Identities = 422/612 (69%), Gaps = 12/612 (2%)
Strand=Plus/Minus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
|| ||| ||||||||||| || || || ||||||| ||||| ||||| || || ||
Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
|||||| ||||| || || || ||||||||||| || ||||| ||| ||||| ||
Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAA 137823
Query 33698 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGT 33753
|||||| ||||| || |||| | ||||| || | | |||| || | | | |
Sbjct 137822 GAAGATACCTTCAAC-GCAGGCGAAGGC--TACGATACGCTCCGCAAAGGTTTGAGATC- 137767
Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813
| | ||||| | ||||| | || ||||| ||||| || || ||||| || |
Sbjct 137766 CGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTG 137707
Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873
| |||||||| || | |||| || | || || | || ||||| | | |||||||
Sbjct 137706 CGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTAT 137647
Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933
|||| ||||||||||| || ||||| || || ||||||||||||||| | ||||| |
Sbjct 137646 ACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCG 137587
Query 33934 TAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992
| ||| || || | ||| ||||| ||| | ||| || || || |||||| |
Sbjct 137586 ATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAG 137528
Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT 34051
|| || || || || || ||||| || || || | | |||| | | || ||| || |
Sbjct 137527 GCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGT-TTAAATTCTC 137469
Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111
|||||| || | |||| ||| ||||| || | |||||||| || ||||| ||
Sbjct 137468 CCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGC 137409
Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171
||| || ||||| | |||||| | | ||||| || ||||| ||| |||||| | |||
Sbjct 137408 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGG 137349
Query 34172 ATTTGGTGCAAG 34183
|||| | |||
Sbjct 137348 GGTTGGGGTAAG 137337
>seq14680
Length=376954
Score = 109 bits (120), Expect = 7e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721
|||||| |||||||| | |||||||| || || || |||||| ||| ||| | | ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781
||| || | || | || || ||||| | |||||||| || || || | ||| ||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841
||| || ||||||||||| |||| ||| | | ||||| | ||||||| |||| ||
Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736
Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
|||||| || || || |||| ||| || || || || || || ||
Sbjct 229737 AGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | || | ||| || | |||| | || |||| |||||||| ||||||
Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| ||| | ||||| ||||| || || | |||| | ||||| |||||| || ||
Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| ||| || || || || ||| || | || || ||| | || ||||| ||
Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
|| || ||||||||||| |||| | |||||||||||||
Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629673434751360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |