Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14462 217 2e-51 seq14680 109 7e-19 >seq14462 Length=746139 Score = 217 bits (240), Expect = 2e-51 Identities = 422/612 (69%), Gaps = 12/612 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| ||||||||||| || || || ||||||| ||||| ||||| || || || Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 |||||| ||||| || || || ||||||||||| || ||||| ||| ||||| || Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAA 137823 Query 33698 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGT 33753 |||||| ||||| || |||| | ||||| || | | |||| || | | | | Sbjct 137822 GAAGATACCTTCAAC-GCAGGCGAAGGC--TACGATACGCTCCGCAAAGGTTTGAGATC- 137767 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | ||||| | ||||| | || ||||| ||||| || || ||||| || | Sbjct 137766 CGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTG 137707 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | |||||||| || | |||| || | || || | || ||||| | | ||||||| Sbjct 137706 CGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTAT 137647 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| ||||||||||| || ||||| || || ||||||||||||||| | ||||| | Sbjct 137646 ACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCG 137587 Query 33934 TAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | ||| || || | ||| ||||| ||| | ||| || || || |||||| | Sbjct 137586 ATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAG 137528 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTATT 34051 || || || || || || ||||| || || || | | |||| | | || ||| || | Sbjct 137527 GCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGT-TTAAATTCTC 137469 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||||| || | |||| ||| ||||| || | |||||||| || ||||| || Sbjct 137468 CCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGC 137409 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 ||| || ||||| | |||||| | | ||||| || ||||| ||| |||||| | ||| Sbjct 137408 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGG 137349 Query 34172 ATTTGGTGCAAG 34183 |||| | ||| Sbjct 137348 GGTTGGGGTAAG 137337 >seq14680 Length=376954 Score = 109 bits (120), Expect = 7e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| ||| | | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || | || || ||||| | |||||||| || || || | ||| || Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| || ||||||||||| |||| ||| | | ||||| | ||||||| |||| || Sbjct 229677 CATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTAA 229736 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || || || |||| ||| || || || || || || || Sbjct 229737 AGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | |||| | || |||| |||||||| |||||| Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| ||||| || || | |||| | ||||| |||||| || || Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || || || || ||| || | || || ||| | || ||||| || Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || ||||||||||| |||| | ||||||||||||| Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629673434751360