Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq14462 136 4e-27 seq14680 118 1e-21 >seq14462 Length=746139 Score = 136 bits (150), Expect = 4e-27 Identities = 386/586 (66%), Gaps = 18/586 (3%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || ||||| ||||| | |||||||||| |||| || || || || || | Sbjct 137939 ACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAG 137880 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAG 11746 ||| ||||| | ||||||||||| | ||| || || ||||| || | ||| || ||| Sbjct 137879 TCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACT--ACCGGAGAAG 137822 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || || || || ||||| | | |||| | | || || |||| Sbjct 137821 AAGATACCTTCAACGCAGGCGAAGGCTACGATACG--CTCCGCAAAGGTT--TG--AGAT 137768 Query 11807 ------ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 ||||| | | ||||| | |||||||| || || |||||||| || Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708 Query 11861 GCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 ||| ||| | ||| | ||||| | || || | | || ||||| | | || |||| Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 ||||| || ||||||||||| || || || ||||||||||| |||||| || ||||| Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588 Query 11981 GAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 || ||| ||||| |||| |||| || | |||||| || || |||||| Sbjct 137587 GATACCTGAACATCGGACAT-GAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGA 137529 Query 12040 AGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATC 12099 | || || || |||| | ||| || || |||| | |||| | | |||| || || Sbjct 137528 GGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTC 137469 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 |||||| | || | ||||| ||| ||||| || | |||||||| ||| | | Sbjct 137468 CCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGC 137409 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | || ||||| | |||||| | | || | ||| ||||| ||| Sbjct 137408 CTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATA 137363 >seq14680 Length=376954 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||| | ||||||||| || ||||| | |||||||||||||| |||||||| ||| Sbjct 229545 TTGAGCCCTTGGAGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTG 229604 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| ||||||| |||||| ||| |||||| |||||| || | || Sbjct 229605 AGACATCAAATGGTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGC 229664 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATA 38579 || ||||| | ||||||||| |||||||| | | ||| | | ||| || || || Sbjct 229665 AACTCTCATCAACATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTA 229724 Query 38580 CGATTTTTCTAATGTTTTTATTCCAAAATA 38609 ||| ||||||| ||||| | ||| || || Sbjct 229725 GGATCTTTCTAAAGTTTTGAATCCGAAGTA 229754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| || | || ||| | | | || | |||| | | || | ||| || || |||||| Sbjct 229227 CCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCA 229286 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 |||||| | || ||| |||| || ||| | || | || ||||||||| | ||| Sbjct 229287 TTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGAA 229346 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | || || ||||| ||| ||| ||| | ||| || | ||| | |||||| ||||| Sbjct 229347 ACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATA 229406 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || || || || |||||||| || || || |||||| ||| Sbjct 229407 CCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468417554673280