Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 203 4e-47
seq14680 114 2e-20
seq16652 93.3 6e-14
>seq14462
Length=746139
Score = 203 bits (224), Expect = 4e-47
Identities = 408/595 (69%), Gaps = 14/595 (2%)
Strand=Plus/Minus
Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213
|| ||| ||||||||||| || || || ||||||| ||||| |||||||| || ||
Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883
Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272
|||||| ||||| || || || ||||||||||| || ||||| ||| | | || || |
Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824
Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332
|||| || ||||| || || ||||| | | | ||| || | | || ||
Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAA----GGTTTGAGAT 137768
Query 36333 --GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388
|| ||||| | ||||| | || ||||| ||||| || ||||| || ||
Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708
Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448
|| |||||||| || | |||| || | || || | || ||||||| | ||||||
Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648
Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508
||||| ||||||||||| || ||||| || |||||||||||||||||| | |||||
Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588
Query 36509 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567
| | ||| || || | ||| ||||| ||| | ||| || || || || |||
Sbjct 137587 GATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGA 137529
Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTAT 36626
||| || || || || || ||||| || || || | | |||| | || ||| || |
Sbjct 137528 GGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGT-TTAAATTCT 137470
Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686
|||||| || | |||| ||| ||||| || | |||||||| || ||||| |
Sbjct 137469 CCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGG 137410
Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741
|||| || ||||| | |||||| | | |||||||| || || ||| ||||||
Sbjct 137409 CCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCT 137355
>seq14680
Length=376954
Score = 114 bits (126), Expect = 2e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
|||||| || || | || | ||| || | |||| | || |||| |||||||| ||||||
Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| ||||| ||||| || || || || |||||| ||||||| |||||| || ||
Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| || || || || ||| || | || || ||| | |||||||| ||
Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405
Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437
||||| || ||||||||| |||| | |||||||||||||
Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514
|||||| |||||||| | |||||||| || || || |||||| ||| ||| | | ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574
||| || | || | || || ||||| | |||||||| || || || | ||| ||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 66633
||| || ||||||||||| || | ||| | || | ||||| | ||||||| |||| |
Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735
Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682
||||||| || || || |||| ||| || || || || || || ||
Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784
>seq16652
Length=266037
Score = 93.3 bits (102), Expect = 6e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274
||| || || || | || | ||| || | ||| | |||| || ||| || | ||| ||
Sbjct 240193 TCCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCC 240134
Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334
||| ||||| ||||| || || ||||| |||||| |||||||||| ||| || |||
Sbjct 240133 ATTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGA 240074
Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394
| ||| || || || || ||| || | || ||| ||| || || ||||| ||
Sbjct 240073 AACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATAT 240014
Query 66395 GCCCTCTATACTATCATCCATCAT 66418
||||| ||||||||||| ||||
Sbjct 240013 CCCCTCGATACTATCATCTTTCAT 239990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658022144246080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |