Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14462 203 4e-47 seq14680 114 2e-20 seq16652 93.3 6e-14 >seq14462 Length=746139 Score = 203 bits (224), Expect = 4e-47 Identities = 408/595 (69%), Gaps = 14/595 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| ||||||||||| || || || ||||||| ||||| |||||||| || || Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 |||||| ||||| || || || ||||||||||| || ||||| ||| | | || || | Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 |||| || ||||| || || ||||| | | | ||| || | | || || Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAA----GGTTTGAGAT 137768 Query 36333 --GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || ||||| | ||||| | || ||||| ||||| || ||||| || || Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || |||||||| || | |||| || | || || | || ||||||| | |||||| Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 ||||| ||||||||||| || ||||| || |||||||||||||||||| | ||||| Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588 Query 36509 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 | | ||| || || | ||| ||||| ||| | ||| || || || || ||| Sbjct 137587 GATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGA 137529 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TTTGGTGTTAGTTTAT 36626 ||| || || || || || ||||| || || || | | |||| | || ||| || | Sbjct 137528 GGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGT-TTAAATTCT 137470 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 |||||| || | |||| ||| ||||| || | |||||||| || ||||| | Sbjct 137469 CCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGG 137410 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 |||| || ||||| | |||||| | | |||||||| || || ||| |||||| Sbjct 137409 CCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCT 137355 >seq14680 Length=376954 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | || | ||| || | |||| | || |||| |||||||| |||||| Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || |||||| ||||||| |||||| || || Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || ||| | |||||||| || Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| || ||||||||| |||| | ||||||||||||| Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||||| || || || |||||| ||| ||| | | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || | || || ||||| | |||||||| || || || | ||| || Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 66633 ||| || ||||||||||| || | ||| | || | ||||| | ||||||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||||| || || || |||| ||| || || || || || || || Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784 >seq16652 Length=266037 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || || || | || | ||| || | ||| | |||| || ||| || | ||| || Sbjct 240193 TCCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCC 240134 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| |||||| |||||||||| ||| || ||| Sbjct 240133 ATTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGA 240074 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || ||| ||| || || ||||| || Sbjct 240073 AACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATAT 240014 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||| ||||||||||| |||| Sbjct 240013 CCCCTCGATACTATCATCTTTCAT 239990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658022144246080