Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16023 105 7e-18 seq14499 100 3e-16 seq14413 91.5 1e-13 seq16577 89.7 5e-13 seq12257 86.0 6e-12 >seq16023 Length=121467 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || ||||| || || ||||| || ||| Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| ||||| || |||| ||||||||||| || || || Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| ||| | | || | ||||| | | ||| ||| Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCAACC 24794 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 24795 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCATA 24842 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||| |||||||| || ||||| || || || || | ||| ||| Sbjct 25317 ACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCGTCCTCG 25376 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||||||||| |||||| | ||||| || ||||| || ||||| || || | Sbjct 25377 AGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 25436 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | ||||||| | ||| ||||| | ||| | ||||||| Sbjct 25437 ATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTAATCGTCTTG 25496 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||||| ||||| ||||||||| Sbjct 25497 CCCGTTAGGGTTTTGACGAAGATTTGCATA 25526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| ||||||||||| || || Sbjct 24387 CCACCACGGAGACGGAGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCG 24446 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 24447 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 24506 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 24507 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACT 24566 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| |||||||| || || || || || |||||| Sbjct 24567 TCGAGGGTAATGGTCTTACCGGTCAAGGTCTTAACAAAAATCTGCATA 24614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || ||||||| || ||||| || || ||||| || ||| Sbjct 24843 CCACCACGGAGACGCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCT 24902 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||||||||| ||||| |||||| | ||||| || || || Sbjct 24903 AGGGTACGACCGTCCTCGAGCTGTTTGCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGG 24962 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | || | ||||| | | ||||||| Sbjct 24963 ATACCTTCCTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCCACC 25022 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| || || || || || || || || |||||| Sbjct 25023 TCCAAAGTGATGGTCTTTCCCGTTAAAGTCTTCACAAAGATCTGCATA 25070 >seq14499 Length=662897 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | ||||| |||| || || || ||||| ||||| || || Sbjct 223709 CCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCA 223768 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||||||||||||||| |||| || | ||| ||||| || || Sbjct 223769 AGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGG 223828 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | || | | || | ||||| | | ||| || Sbjct 223829 ATCCCTTCTTTGTC-TTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGAC 223887 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || |||||||| | ||||| ||||| ||||||||| Sbjct 223888 TTCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | ||| ||||| | || ||||| ||||| || || |||||| Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| ||||| || || |||| || | |||||||| ||||| Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| ||| | | || | ||||| | | ||| ||| Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACC 224116 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| || | ||||||||||| ||||||||| Sbjct 224117 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATA 224164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||| || | || ||||| |||||||| || |||||| | || | ||||| Sbjct 224182 AACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCTAAGGTACGGCCATCTTC 224241 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||| || || |||| || | ||||| || ||||| || ||||| ||||| Sbjct 224242 GAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTG 224301 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | ||||||| | ||||||||| | || | ||||| Sbjct 224302 GATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCACCTCGAGAGTAATGGTCTT 224361 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| ||||| |||||||| Sbjct 224362 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 >seq14413 Length=739167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || || || |||||||| ||||| Sbjct 402398 CCACCACGGAGACGTAGCACCAGGTGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCA 402457 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || ||| |||||| ||||||||| || ||||| Sbjct 402458 AGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGA 402517 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | ||||| | || | ||||| | | ||| || Sbjct 402518 ATACCCTCCTTGTC-TTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAAC 402576 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || |||||||| | || ||||| || || |||||| Sbjct 402577 TTCTAGAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCATA 402625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||||||||| ||| |||| || | ||||| || ||||| || ||||||||| Sbjct 402698 TCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTG 402757 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||||| ||| ||||| | || | Sbjct 402758 TCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATG 402817 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||||||| | || ||||| || ||||||||| Sbjct 402818 GTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCATA 402853 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| || || | |||| || |||||||||||||| Sbjct 403340 GTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGTTTACCG 403399 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | |||||| || ||||| || || || ||||| ||| ||| || Sbjct 403400 GCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTTGCCTTG 403459 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||| | || | || || || || | || Sbjct 403460 ACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAGTGAGAGTC 403519 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 403520 TTGACGAAGATTTGCATA 403537 >seq16577 Length=433012 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| | |||| ||| || || || || ||||| |||||| Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| ||||| ||||| | |||| |||||||||||| || || Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| | || | ||| | | || | ||| || | | || || Sbjct 33747 ATTCCTTCTTTATC-CTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGAC 33805 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||| || || || | ||||| ||||| || ||||| Sbjct 33806 TTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 33853 >seq12257 Length=1143886 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| ||||||| ||| || || || || ||||| ||||| Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || | || || || || |||||| ||||||||||| || || Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | || || | || || ||| Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACC 1016372 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 1016373 TCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1016419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495950450950400