Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 215 7e-51
seq14680 109 8e-19
>seq14462
Length=746139
Score = 215 bits (238), Expect = 7e-51
Identities = 424/619 (68%), Gaps = 6/619 (1%)
Strand=Plus/Minus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
|| ||| ||||||||||| || || || ||||||| |||| |||||||| || ||
Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074
|||||| ||||| || || || ||||||||||| || ||||| ||| || || || |
Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824
Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCA 50133
||||||| ||||| || ||| ||||| || | | ||| || | | | | | |
Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGATC-CG 137765
Query 50134 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193
| ||||| | ||||| | || ||||| ||||| || || ||||| || ||
Sbjct 137764 TCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCG 137705
Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253
|||||||| || | |||| || | || || | || ||||| | | |||||||||
Sbjct 137704 CGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATAC 137645
Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313
|| ||||||||||| || ||||| || || ||||||||||||||| | ||||| |
Sbjct 137644 ATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGAT 137585
Query 50314 ATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372
| ||| || || | ||| ||||| || | ||| || || || || ||| |||
Sbjct 137584 ACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGC 137526
Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432
|| || || || || ||||| || || || ||| |||| | ||| || | |||
Sbjct 137525 GGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCA 137466
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
||| || | |||| ||| ||||| || | |||||||| || ||||| |||||
Sbjct 137465 ATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTT 137406
Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|| ||||| | |||||| | | ||||| || ||||| ||| |||||| | ||| |
Sbjct 137405 CTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGT 137346
Query 50553 TGGTGCAAGGATCGGTTCC 50571
||| | ||| | ||| |||
Sbjct 137345 TGGGGTAAGAAGCGGCTCC 137327
>seq14680
Length=376954
Score = 109 bits (120), Expect = 8e-19
Identities = 158/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | || | ||| || | |||| | || |||| |||||||| ||||||
Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || || || |||||| | ||||| |||||| || ||
Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || || || || ||| || | || || ||| | |||||||| ||
Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
||||| ||||||||||| |||| | |||||||||||||
Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Score = 104 bits (114), Expect = 3e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393
|||||| |||||||| | |||||||| || || || |||||| ||| ||||| | ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453
||| || | || | || || ||||| | |||||||| || || || | ||| ||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCA 80512
||| || ||||||||||| || | ||| | || | ||||| | ||| ||| |||| |
Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735
Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||||| || || || |||| ||| || || || || || || ||
Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/141 (74%), Gaps = 10/141 (7%)
Strand=Plus/Plus
Query 79407 ATCAAATGGATAATT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464
||||||||| ||| || ||| ||||| || ||||| | ||||| |||||||||||
Sbjct 227909 ATCAAATGGC--ATTCCTAGGAGGATAAATGCATCTGCAAGACCTTGTACACCAATACCA 227966
Query 79465 ATAGGTCTATGTCTCTTATTAGAA---ATTTCAGCTTCTGGAATAGGATAATAATTAATA 79521
|| |||||||| | | | || ||| || ||| ||| | |||||| ||||| | |
Sbjct 227967 ATTGGTCTATGACGCATGTTTGAAGTTCTTGCAGTCTCT---ACAGGATAGTAATTCACA 228023
Query 79522 TCTATAATTTTATTGAGATTC 79542
|||||||| ||||| ||||||
Sbjct 228024 TCTATAATCTTATTCAGATTC 228044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718104388271680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |