Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq14462 215 7e-51 seq14680 109 8e-19 >seq14462 Length=746139 Score = 215 bits (238), Expect = 7e-51 Identities = 424/619 (68%), Gaps = 6/619 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| ||||||||||| || || || ||||||| |||| |||||||| || || Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 |||||| ||||| || || || ||||||||||| || ||||| ||| || || || | Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTCA 50133 ||||||| ||||| || ||| ||||| || | | ||| || | | | | | | Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGATC-CG 137765 Query 50134 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 | ||||| | ||||| | || ||||| ||||| || || ||||| || || Sbjct 137764 TCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCG 137705 Query 50194 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 |||||||| || | |||| || | || || | || ||||| | | ||||||||| Sbjct 137704 CGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATAC 137645 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || ||||||||||| || ||||| || || ||||||||||||||| | ||||| | Sbjct 137644 ATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGAT 137585 Query 50314 ATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | ||| ||||| || | ||| || || || || ||| ||| Sbjct 137584 ACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGC 137526 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 || || || || || ||||| || || || ||| |||| | ||| || | ||| Sbjct 137525 GGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCA 137466 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| || | |||| ||| ||||| || | |||||||| || ||||| ||||| Sbjct 137465 ATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTT 137406 Query 50493 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || ||||| | |||||| | | ||||| || ||||| ||| |||||| | ||| | Sbjct 137405 CTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGT 137346 Query 50553 TGGTGCAAGGATCGGTTCC 50571 ||| | ||| | ||| ||| Sbjct 137345 TGGGGTAAGAAGCGGCTCC 137327 >seq14680 Length=376954 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | |||| | || |||| |||||||| |||||| Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||| |||||| || || Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || ||| | |||||||| || Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| |||| | ||||||||||||| Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||||| || || || |||||| ||| ||||| | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || | || || ||||| | |||||||| || || || | ||| || Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || ||||||||||| || | ||| | || | ||||| | ||| ||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||| || || || |||| ||| || || || || || || || Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/141 (74%), Gaps = 10/141 (7%) Strand=Plus/Plus Query 79407 ATCAAATGGATAATT--TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464 ||||||||| ||| || ||| ||||| || ||||| | ||||| ||||||||||| Sbjct 227909 ATCAAATGGC--ATTCCTAGGAGGATAAATGCATCTGCAAGACCTTGTACACCAATACCA 227966 Query 79465 ATAGGTCTATGTCTCTTATTAGAA---ATTTCAGCTTCTGGAATAGGATAATAATTAATA 79521 || |||||||| | | | || ||| || ||| ||| | |||||| ||||| | | Sbjct 227967 ATTGGTCTATGACGCATGTTTGAAGTTCTTGCAGTCTCT---ACAGGATAGTAATTCACA 228023 Query 79522 TCTATAATTTTATTGAGATTC 79542 |||||||| ||||| |||||| Sbjct 228024 TCTATAATCTTATTCAGATTC 228044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718104388271680