Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq14413 98.7 8e-16
seq17130 86.0 5e-12
>seq14413
Length=739167
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||| | ||||| ||| ||||||||| | ||||| || |
Sbjct 402626 CCACCACGGAGACGAAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCA 402685
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || || | ||||| |||||||| || | || ||| || || | ||
Sbjct 402686 AGGGTACGGCCATCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGG 402745
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || |||| ||||||| || ||| |||||| | ||| ||
Sbjct 402746 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACC 402805
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || ||||| ||||| || || || ||||||||||||||
Sbjct 402806 TCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852
>seq17130
Length=165301
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
|| ||||| | ||| ||||| || | ||||||||| | ||||| | |||| ||
Sbjct 19685 ACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCTAATGTCCTGCCGTCTTCT 19744
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
| |||||| ||||| ||||| || || || || || | || | |||||| || || |
Sbjct 19745 AGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGG 19804
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080
||| | |||||| || | | ||| || | || || || | || || |||||
Sbjct 19805 ATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTTTC 19864
Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115
|| || ||||||||||| || || ||||| |||||
Sbjct 19865 CCCGTGAGAGTTTTCACGAAGATCTGCATCTTCTT 19899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381284486886096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |