Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq14413 98.7 8e-16 seq17130 86.0 5e-12 >seq14413 Length=739167 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | ||||| ||| ||||||||| | ||||| || | Sbjct 402626 CCACCACGGAGACGAAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCA 402685 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||||| |||||||| || | || ||| || || | || Sbjct 402686 AGGGTACGGCCATCTTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGG 402745 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| || ||| |||||| | ||| || Sbjct 402746 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACC 402805 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| ||||| || || || |||||||||||||| Sbjct 402806 TCTAAAGTGATGGTTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 >seq17130 Length=165301 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | ||| ||||| || | ||||||||| | ||||| | |||| || Sbjct 19685 ACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCTAATGTCCTGCCGTCTTCT 19744 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| ||||| ||||| || || || || || | || | |||||| || || | Sbjct 19745 AGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGG 19804 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | |||||| || | | ||| || | || || || | || || ||||| Sbjct 19805 ATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTTTC 19864 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || || ||||||||||| || || ||||| ||||| Sbjct 19865 CCCGTGAGAGTTTTCACGAAGATCTGCATCTTCTT 19899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381284486886096