Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 203 4e-47
seq14680 109 7e-19
>seq14462
Length=746139
Score = 203 bits (224), Expect = 4e-47
Identities = 425/623 (68%), Gaps = 14/623 (2%)
Strand=Plus/Minus
Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120
|| ||| ||||||||||| || || || || |||| ||||| |||||||| || ||
Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883
Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAA 42179
|||||| ||||| || || || ||||||||||| || || || ||| | | || || |
Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 42239
||||||| ||||| || || ||||| | | | ||| || | | || ||
Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAA----GGTTTGAGAT 137768
Query 42240 --GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295
|| ||||| | ||||| | || ||||| ||||| || || ||||| ||
Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708
Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355
|| |||||||| || | |||| || | || || | || ||||| | | ||||||
Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648
Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415
||||| || |||||||| || ||||| || || ||||||||||||||| | |||||
Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588
Query 42416 GTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474
| ||||| || || | ||| ||||| || | ||| || || || || |||
Sbjct 137587 GATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGA 137529
Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTG-TTAATTTAT 42533
||| || || || || || ||||| || || || | | |||| ||| | |||| || |
Sbjct 137528 GGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCG-CCGTCGTTTAAATTCT 137470
Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593
|||||| || | |||| ||| ||||| || | |||||||| || || || |
Sbjct 137469 CCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGG 137410
Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTG 42653
|||| || ||||| | |||||| | | |||||||| ||||| ||| |||||| | ||
Sbjct 137409 CCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTG 137350
Query 42654 GATTTGGTGCAAGGATCGGTTCC 42676
| |||| | ||| | ||| |||
Sbjct 137349 GGGTTGGGGTAAGAAGCGGCTCC 137327
>seq14680
Length=376954
Score = 109 bits (120), Expect = 7e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476
|||||| |||||||| | |||||||| || || || |||||| ||| ||||| | ||
Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616
Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536
||| || | || | || || ||||| | || ||||| || || || | ||| ||
Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676
Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAGGATTTTTCCA 72595
|||||| ||||||||||| || | ||| | || | ||||| | ||||||| |||| |
Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||||||| || || || |||| ||| || || || || || || ||
Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236
|||||| || || | || | ||| || | |||| | || |||| |||||||| ||||||
Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285
Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296
||| |||| ||||| || || || || |||||| | ||||| ||||| || ||
Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345
Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356
| ||| || || || || ||| || | || || ||| | |||||||| ||
Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405
Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
||||| || ||||||||| |||| | |||||||||||||
Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670985576237120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |