Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq16577 113 5e-20 seq14499 105 7e-18 seq17130 93.3 4e-14 seq14413 93.3 4e-14 seq16938 91.5 1e-13 seq12257 89.7 5e-13 seq16023 87.8 2e-12 >seq16577 Length=433012 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | ||| | ||||| || ||||| || || |||||||||||| Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||||||||| ||||| | |||| |||||||||||| || || Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||| || ||| | | || | || || | | ||| ||| Sbjct 33747 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACT 33806 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||| || || || | ||||| ||||| || ||||| Sbjct 33807 TCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 33853 >seq14499 Length=662897 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||| | |||||||||| || ||||| ||||| |||||||| || Sbjct 223709 CCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCA 223768 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| ||||| ||||||||||| |||| || | ||| ||||| || || Sbjct 223769 AGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGG 223828 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || || | | || | ||||| | | || ||| Sbjct 223829 ATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 223888 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || |||||||| | ||||| ||||| ||||||||| Sbjct 223889 TCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | ||| || || | || || || ||||| || ||||||||| Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||||| || || |||| || | |||||||| ||||| Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||| ||| | | || | ||||| | | || || Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACC 224116 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || ||||| || | ||||||||||| ||||||||| Sbjct 224117 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATA 224164 >seq17130 Length=165301 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 ||||||| |||||| | ||||||||||| || ||||| || || || |||||||| ||| Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || |||||| |||||||| || || | || | |||||||| || || || Sbjct 19727 -AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGG 19785 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | || || | | ||| || Sbjct 19786 GATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | ||||| ||||| || ||||| Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893 >seq14413 Length=739167 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || ||||||||||| | |||| |||||||| ||| Sbjct 402422 TGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGT 402481 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| |||||| ||||||||| || ||||| || || || ||||| ||| || Sbjct 402482 TTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTA 402541 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||||| | || | ||||| | | || ||||| | ||| | || |||||||| Sbjct 402542 GCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTA 402601 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || ||||| || || |||||| Sbjct 402602 AGGGTCTTTACAAAAATCTGCATA 402625 >seq16938 Length=276168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||| ||||| ||||||||||| || |||||||||||| | ||| || || Sbjct 257043 CAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCGGCAAGTGTTCTGCCATC 257102 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| ||||| ||| |||| || | || ||||| || ||||| || |||||||| Sbjct 257103 TTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGTGGTATACCCTCTTTGTC 257162 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||| ||||| ||||| ||||| || ||||||||||| | ||| || || Sbjct 249777 CAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCAAGTGTTCTTCCATC 249718 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| ||||| ||| |||| || | || ||||| || ||||| || |||||||| Sbjct 249717 TTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGTATACCCTCTTTGTC 249658 >seq12257 Length=1143886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||| | ||| || |||| || ||||| || || ||||||||||| Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| || | ||| || || || |||||| ||||||||||| || || Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || ||| | | || | ||| || | || ||| || Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACC 1016372 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 1016373 TCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1016419 >seq16023 Length=121467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | || || || || || |||||||| ||| Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || || ||||| || |||| ||||||||||| || || || Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||||| ||| | | || | ||||| | | || || Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCAACC 24794 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | || ||||||||||| ||||| ||||| || |||||| Sbjct 24795 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCATA 24842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506898344403840