Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq16577 113 5e-20
seq14499 105 7e-18
seq17130 93.3 4e-14
seq14413 93.3 4e-14
seq16938 91.5 1e-13
seq12257 89.7 5e-13
seq16023 87.8 2e-12
>seq16577
Length=433012
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | ||| | ||||| || ||||| || || ||||||||||||
Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||||||||||||||| ||||| | |||| |||||||||||| || ||
Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| |||||||| || ||| || ||| | | || | || || | | ||| |||
Sbjct 33747 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACT 33806
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||| | ||| || || || | ||||| ||||| || |||||
Sbjct 33807 TCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 33853
>seq14499
Length=662897
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| |||||| | |||||||||| || ||||| ||||| |||||||| ||
Sbjct 223709 CCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCA 223768
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | ||| ||||| ||||||||||| |||| || | ||| ||||| || ||
Sbjct 223769 AGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGG 223828
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||| || || | | || | ||||| | | || |||
Sbjct 223829 ATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 223888
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | || |||||||| | ||||| ||||| |||||||||
Sbjct 223889 TCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| ||| | | ||| || || | || || || ||||| || |||||||||
Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||||||||||| || || |||| || | |||||||| |||||
Sbjct 223997 AAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGA 224056
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| || ||| ||| | | || | ||||| | | || ||
Sbjct 224057 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACC 224116
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || ||||| || | ||||||||||| |||||||||
Sbjct 224117 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATA 224164
>seq17130
Length=165301
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016
||||||| |||||| | ||||||||||| || ||||| || || || |||||||| |||
Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||| || |||||| |||||||| || || | || | |||||||| || || ||
Sbjct 19727 -AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGG 19785
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||| ||||| || || ||| | | || | || || | | ||| ||
Sbjct 19786 GATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAAC 19845
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | || || || || | ||||| ||||| || |||||
Sbjct 19846 CTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893
>seq14413
Length=739167
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| || ||||| || || ||||||||||| | |||| |||||||| |||
Sbjct 402422 TGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGT 402481
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
|| || ||| |||||| ||||||||| || ||||| || || || ||||| ||| ||
Sbjct 402482 TTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTA 402541
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
||||| | || | ||||| | | || ||||| | ||| | || ||||||||
Sbjct 402542 GCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTA 402601
Query 143162 AATGTTTTTACGAATATTTGCATA 143185
| || ||||| || || ||||||
Sbjct 402602 AGGGTCTTTACAAAAATCTGCATA 402625
>seq16938
Length=276168
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
||| |||| ||||| ||||||||||| || |||||||||||| | ||| || ||
Sbjct 257043 CAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCGGCAAGTGTTCTGCCATC 257102
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| ||||| ||||| ||| |||| || | || ||||| || ||||| || ||||||||
Sbjct 257103 TTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGTGGTATACCCTCTTTGTC 257162
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031
||| |||| ||||| ||||| ||||| || ||||||||||| | ||| || ||
Sbjct 249777 CAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCGCAAGTGTTCTTCCATC 249718
Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| ||||| ||||| ||| |||| || | || ||||| || ||||| || ||||||||
Sbjct 249717 TTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTGGTATACCCTCTTTGTC 249658
>seq12257
Length=1143886
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| ||||| | ||| || |||| || ||||| || || |||||||||||
Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||| || | ||| || || || |||||| ||||||||||| || ||
Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| ||||| || || ||| | | || | ||| || | || ||| ||
Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACC 1016372
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||| || || | ||||| ||||| || |||||
Sbjct 1016373 TCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 1016419
>seq16023
Length=121467
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || |||| ||| | || ||||| | || || || || || |||||||| |||
Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| || || || || ||||| || |||| ||||||||||| || || ||
Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| ||||| ||| | | || | ||||| | | || ||
Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCAACC 24794
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| || | || ||||||||||| ||||| ||||| || ||||||
Sbjct 24795 TCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCATA 24842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506898344403840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |