Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14462 176 7e-39 >seq14462 Length=746139 Score = 176 bits (194), Expect = 7e-39 Identities = 382/559 (68%), Gaps = 16/559 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| |||| || |||||||| | ||| || |||||||| Sbjct 137388 ATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTA 137447 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| ||||||||||| ||| | || || ||| | || || | Sbjct 137448 TCACAGGACGGACGCGATTGGGAGA---ATTTAAACGACGGCGAACGACACTTCATCAAG 137504 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 || | || |||||||| |||| ||| ||||| |||||| || ||||| | ||| Sbjct 137505 CATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCTTGCATCTCGA 137564 Query 125199 TTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGA 125256 ||| | || ||| | | | |||| | |||||||| |||||||| |||||| || Sbjct 137565 TTCATGTCCGATGTTCA-GGTATCGGAGGCG-CGTGCTTTCTACGGATTTCAAATCGCGA 137622 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGC 125316 ||||||| | || ||||| ||||| | ||| |||| | |||| || | | | Sbjct 137623 TTGAGAATATTCATTCGGAGATGTATAGTCTACTTCTTGATACCTACA-TCAAGGACAAC 137681 Query 125317 AACGTAA-ACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || | || | || |||||| ||||||||| || | |||| | | || || || Sbjct 137682 AAAGAAAGAGACCATCTCTTTCGCGCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCG 137741 Query 125376 CAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 ||||||| ||| |||||||| || ||| ||| || || | | || || Sbjct 137742 CAATGGGCGATGACTTGGATCGACGGATCTCAAACCTT----TGCGGAGCGTATCGTAGC 137797 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCA 125493 |||||| ||| || || |||||||| || |||||||| ||| |||| || ||||| | Sbjct 137798 CTTCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTTTCTGC-TCCATTTTCTGGCTTA 137856 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | || || || |||||||| ||||| || | |||||||| || || |||||||| | Sbjct 137857 AAAAACGAGGTCTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAG 137916 Query 125554 GCCTACACTGTGACTTTGC 125572 |||| || || || || || Sbjct 137917 GCCTCCATTGCGATTTCGC 137935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740889571549120