Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq17130 89.7 3e-13 seq12257 87.8 1e-12 seq16577 84.2 1e-11 >seq17130 Length=165301 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||||||| || | || ||||| | || || || || || ||||||||||||| Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 33203 AAATTGAGTTG--GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 || || || ||| || | ||| ||||| || ||||| ||||||||||||| | Sbjct 19727 AA--TGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTG 19784 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || ||||| || || ||| | ||| || | | || || || | || || Sbjct 19785 GGATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAA 19844 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || || || ||||| ||||| |||||||| ||||| || ||||| || Sbjct 19845 CCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896 >seq12257 Length=1143886 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/237 (68%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || || | ||||| || | || || || || || || |||||||| | Sbjct 1016191 CACCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCG 1016250 Query 33201 ACAAATTGAGTTG----GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCC 33256 | ||||| ||| |||||||||||||| || || || |||||||| ||| Sbjct 1016251 CGA----GAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCC 1016306 Query 33257 GTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGT 33316 | || |||||||| || || ||| ||| || | | ||||| || || | Sbjct 1016307 GGTGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGAT 1016366 Query 33317 TGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 | ||| || || || || || || ||||| || ||||| |||||||| ||||| ||| Sbjct 1016367 TCAACCTCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCTTT 1016423 >seq16577 Length=433012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 ||||| || || || || |||||||| | | | | | ||| || | ||| |||||| Sbjct 33657 GTCGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCA 33716 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || ||||||||||| |||| || || |||||||| || |||| ||| Sbjct 33717 GCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTG 33776 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | | || || || | || || || |||||||||||||| ||||| || ||| Sbjct 33777 ACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTT 33836 Query 33353 TTTACGAAAATTTGCATGTTT 33373 || ||||| || ||||| ||| Sbjct 33837 TTCACGAAGATCTGCATCTTT 33857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318706456012176