Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 104 2e-17
seq14413 86.0 4e-12
>seq14499
Length=662897
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| |||||||||||||| | || |||| || | |||||||| || ||
Sbjct 223060 CTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAA 223119
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||| | ||||||||| | || | ||||||||||||| || ||| ||| || |
Sbjct 223120 GATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTGGATCTTTGCTTTCACATT 223179
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
| ||| |||||| | || || || | ||||| ||||||||||| || ||||| ||
Sbjct 223180 ATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAAC 223239
Query 44110 AAATATTTGCAT 44121
||| || |||||
Sbjct 223240 AAAAATCTGCAT 223251
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953
||| || ||||| || | || | ||| || || ||| ||||||||||| ||||||
Sbjct 224164 ACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGC 224223
Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013
||| ||| |||| || | ||||| || || || || | | |||||||| ||||
Sbjct 224224 TAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283
Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073
| ||||| || ||| || ||| ||||| || | | || || | ||||||
Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 224343
Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|||| ||||| || || || || | ||| ||||| || ||||||||
Sbjct 224344 CTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391
>seq14413
Length=739167
Score = 86.0 bits (94), Expect = 4e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | |||||||||||||| ||||| |||||||||||| |||| | ||| || |
Sbjct 402468 CATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCT 402527
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| ||| || ||| || | ||| || |||| ||| || || | || |
Sbjct 402528 TGTCTTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGA 402587
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| ||||| ||||| | ||||| ||||| || |||||
Sbjct 402588 TGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCAT 402624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354698421622176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |