Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq14499 104 2e-17 seq14413 86.0 4e-12 >seq14499 Length=662897 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| |||||||||||||| | || |||| || | |||||||| || || Sbjct 223060 CTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAA 223119 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| | ||||||||| | || | ||||||||||||| || ||| ||| || | Sbjct 223120 GATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTGGATCTTTGCTTTCACATT 223179 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | ||| |||||| | || || || | ||||| ||||||||||| || ||||| || Sbjct 223180 ATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAAC 223239 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 223240 AAAAATCTGCAT 223251 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || ||||| || | || | ||| || || ||| ||||||||||| |||||| Sbjct 224164 ACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGC 224223 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | ||||| || || || || | | |||||||| |||| Sbjct 224224 TAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| || ||| ||||| || | | || || | |||||| Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 224343 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| ||||| || || || || | ||| ||||| || |||||||| Sbjct 224344 CTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 >seq14413 Length=739167 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||||||||||| ||||| |||||||||||| |||| | ||| || | Sbjct 402468 CATCTTCGAGCTGTTTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCT 402527 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| ||| || ||| || | ||| || |||| ||| || || | || | Sbjct 402528 TGTCTTGAATCTTAGCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGA 402587 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | ||||| ||||| | ||||| ||||| || ||||| Sbjct 402588 TGGTTTTGCCGGTAAGGGTCTTTACAAAAATCTGCAT 402624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354698421622176