Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005137.2
Length=131160
Score E
Sequences producing significant alignments: (Bits) Value
seq16938 84.2 2e-11
>seq16938
Length=276168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 107/146 (73%), Gaps = 1/146 (1%)
Strand=Plus/Plus
Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029
|| ||||| |||| |||| | |||||| || | ||| || ||||||||||| || |||
Sbjct 257017 TTGATCATGGTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATG 257076
Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089
||||||||| | | ||| | |||||| | ||| || || ||| | || || ||||||
Sbjct 257077 TTGTAATCGGCAAGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGT 257136
Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115
||||| || | || ||||||||
Sbjct 257137 TGATCAGGTGGTATACCCTCTTTGTC 257162
Score = 82.4 bits (90), Expect = 6e-11
Identities = 107/147 (73%), Gaps = 1/147 (1%)
Strand=Plus/Minus
Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028
||| ||||| |||| |||| | |||||| || | ||| || ||||| ||||| || ||
Sbjct 249804 TTTGATCATGGTTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGAT 249745
Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088
||||||||| | | ||| | |||||| | ||| || |||||| | || || |||||
Sbjct 249744 GTTGTAATCCGCAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTG 249685
Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115
|||||| || | || ||||||||
Sbjct 249684 TTGATCAGGTGGTATACCCTCTTTGTC 249658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419493557577672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |