Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 123 2e-23
seq17369 91.5 1e-13
>seq14462
Length=746139
Score = 123 bits (136), Expect = 2e-23
Identities = 366/560 (65%), Gaps = 7/560 (1%)
Strand=Plus/Minus
Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206
|| ||| || ||||| || || | ||||| |||| |||| |||||| || || ||
Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883
Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAACGAACCCGaa 13264
|| || ||||| || ||||||||||||| ||| || || ||||| |||| | || ||
Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAG-AAACTA-CCGGAG 137825
Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324
|| || || |||||||| || || |||| | | || || | || | |
Sbjct 137824 AAGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGAT--- 137768
Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATT 13384
| || ||||| | | ||||| | ||||| | ||| || || |||| |||
Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708
Query 13385 GCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA 13444
||| ||| | || | | |||| || |||| || || ||||| | | || |||
Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648
Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504
||||| || ||||||||||| || ||||| ||||| || || || ||| | |||||
Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588
Query 13505 GATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564
||||||||||| ||||| |||| ||| | || || || || || |||
Sbjct 137587 GATACCTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAG 137528
Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC 13624
|| || || || || | | ||||| || || | | |||| || || || |
Sbjct 137527 GCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCC 137468
Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684
||||| | || | ||||| ||| || ||||| | |||||||| || || | |||
Sbjct 137467 CAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCC 137408
Query 13685 TTCTTATACATCATCCATAT 13704
||||| |||||| ||| ||
Sbjct 137407 TTCTTGTACATCTCCCAGAT 137388
>seq17369
Length=42627
Score = 91.5 bits (100), Expect = 1e-13
Identities = 84/105 (80%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209
||| ||||| |||||||| | |||||| ||||| ||| ||||||||||| |||||||
Sbjct 25691 ACAAGCAAAGTCACAGTGGAGTCCTTCGTCTCTTGATATAAGCTCGTTTGAGAATGTTAA 25632
Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254
||| ||||| || |||| || |||| ||| || |||||| ||||
Sbjct 25631 ACCTGGCATCAGACCTCTCTTCTTAAGCCAGAAGATAGCA-CAAA 25588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430886214425424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |