Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq14462 123 2e-23 seq17369 91.5 1e-13 >seq14462 Length=746139 Score = 123 bits (136), Expect = 2e-23 Identities = 366/560 (65%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| || ||||| || || | ||||| |||| |||| |||||| || || || Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAACGAACCCGaa 13264 || || ||||| || ||||||||||||| ||| || || ||||| |||| | || || Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAG-AAACTA-CCGGAG 137825 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324 || || || |||||||| || || |||| | | || || | || | | Sbjct 137824 AAGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGAT--- 137768 Query 13325 CTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATT 13384 | || ||||| | | ||||| | ||||| | ||| || || |||| ||| Sbjct 137767 CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATT 137708 Query 13385 GCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA 13444 ||| ||| | || | | |||| || |||| || || ||||| | | || ||| Sbjct 137707 GCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTA 137648 Query 13445 TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCT 13504 ||||| || ||||||||||| || ||||| ||||| || || || ||| | ||||| Sbjct 137647 TACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCC 137588 Query 13505 GATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTA 13564 ||||||||||| ||||| |||| ||| | || || || || || ||| Sbjct 137587 GATACCTGAACATCGGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAG 137528 Query 13565 GCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAAC 13624 || || || || || | | ||||| || || | | |||| || || || | Sbjct 137527 GCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCC 137468 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 ||||| | || | ||||| ||| || ||||| | |||||||| || || | ||| Sbjct 137467 CAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCC 137408 Query 13685 TTCTTATACATCATCCATAT 13704 ||||| |||||| ||| || Sbjct 137407 TTCTTGTACATCTCCCAGAT 137388 >seq17369 Length=42627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| |||||||| | |||||| ||||| ||| ||||||||||| ||||||| Sbjct 25691 ACAAGCAAAGTCACAGTGGAGTCCTTCGTCTCTTGATATAAGCTCGTTTGAGAATGTTAA 25632 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||||| || |||| || |||| ||| || |||||| |||| Sbjct 25631 ACCTGGCATCAGACCTCTCTTCTTAAGCCAGAAGATAGCA-CAAA 25588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430886214425424