Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq16577 158 3e-33
seq14499 156 1e-32
seq17130 143 6e-29
seq14413 141 2e-28
seq12257 131 4e-25
seq16938 125 2e-23
seq16023 113 1e-19
>seq16577
Length=433012
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| || | ||| | ||| || ||||| | || ||||| ||||| || || || || |
Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
||||| | ||||||||| |||||||||||||| ||||| | | || ||||| || ||
Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
||||||||||||||||||||||| ||||| ||||| || | ||||| | ||| ||
Sbjct 33747 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACT 33806
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || || || || ||||| || || ||||| || || |||||||| ||
Sbjct 33807 TCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856
>seq14499
Length=662897
Score = 156 bits (172), Expect = 1e-32
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || | || | ||| || ||||| | || || ||||||||||||||||| ||||
Sbjct 223023 TTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAG 223082
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
||||| | || ||||| || |||||||| || || || | ||||| || || || |
Sbjct 223083 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 223142
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCT 104509
| || ||||||||||| || ||||||||||| ||||| || | ||||| | || |||
Sbjct 223143 GGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATC-CGAGCTTTCA 223201
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| |||||| || ||||| || | ||| || ||||| ||||||||
Sbjct 223202 ACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251
Score = 140 bits (154), Expect = 7e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| |||||| || | |||| || || || || || ||||| || ||
Sbjct 223934 ATACCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCG 223993
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || | || ||||| |||||||| || || || || || ||||| ||||| |||
Sbjct 223994 GCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGA 224053
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| |||||||| || || || ||||||||||| ||||| || | ||| || || | ||
Sbjct 224054 GGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTC-TGAGCTCTC 224112
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || || || ||||| || |||||||| || || |||||
Sbjct 224113 AACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163
Score = 132 bits (146), Expect = 1e-25
Identities = 159/215 (74%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || || || | ||| || || ||||||||||| || |||| ||||| | || |||
Sbjct 223496 AGGACCAGGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCGGCCATCT 223555
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || |||||||| || || || |||||||| || || || || || |||||||| ||
Sbjct 223556 TCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCT 223615
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATA 104524
|| ||||| || |||||||| || | ||| || ||| ||| || || | || ||
Sbjct 223616 TGGATCTTAGCCTTTACATTATCGATGGTGTCTGAGCT---TTCAACTTCCAAAGTTATG 223672
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || |||||||| ||||| || || ||||||||
Sbjct 223673 GTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCAT 223707
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || ||||| ||||||| || || | || ||||| || ||||||||
Sbjct 223283 GTTGACTCCTTTTGTATATTGTAGTCAGCTAAGGTACGGCCATCTTCAAGCTGTTTTCCG 223342
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || || || || || || || || |||||||| || || ||||| ||||||
Sbjct 223343 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTAGCTTTT 223402
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| ||| ||| || |||| ||| || || ||||| || || |||
Sbjct 223403 ACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTTTTACCGGTTAGGGTT 223462
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 223463 TTGACGAAAATCTGCAT 223479
>seq17130
Length=165301
Score = 143 bits (158), Expect = 6e-29
Identities = 175/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383
|| ||| ||| ||||||| | || |||| ||| | || ||||| ||||| |||||
Sbjct 19658 TTCTTTGCTCCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTG 19717
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| |||| || || || |||||||||||||||||||| || ||||||| || || ||
Sbjct 19718 TAATCAGCTAATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGG 19777
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|| || || || ||||| || || || ||||| | ||| ||||| || | |||||
Sbjct 19778 TCCGGTGGGATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGAT 19837
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
| ||| ||||| || || || || || || || || ||||| || || |||||||| ||
Sbjct 19838 GATTCAACCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896
>seq14413
Length=739167
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||| || || || || || || ||||||| || || | || ||
Sbjct 402640 AAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATC 402699
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|||||| ||||| || ||||| || || ||||| || || ||||| ||||||||||| ||
Sbjct 402700 TTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTC 402759
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| ||||| ||||| || | ||| ||| | || ||||||| || || ||
Sbjct 402760 TTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGT 402819
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||| || |||||||| || |||||
Sbjct 402820 TTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852
Score = 131 bits (144), Expect = 4e-25
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || | || | ||| || || || | ||||| || ||||| ||||| || || |
Sbjct 402168 TTCCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCCG 402227
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
||||| | ||||||||| |||||||| || ||||| || || ||||| || || || |
Sbjct 402228 CAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGG 402287
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTT 104507
| || ||||| || ||||||||||| || || || || || | ||| || ||| ||
Sbjct 402288 GAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCT---TT 402344
Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || | ||||||||||| || || | || ||||| || ||||||||
Sbjct 402345 CAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396
Score = 116 bits (128), Expect = 9e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| || || || | || || | || ||||| || ||||||||
Sbjct 402428 GTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 402487
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | || || || ||||| || || || || || |||||||| ||||||
Sbjct 402488 GCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTAGCTTTT 402547
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | ||| || || | || || ||||| || || || || || ||||| ||
Sbjct 402548 ACATTGTCAATGGTGTC-TGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGT 402606
Query 104542 TTTTACAAATATCTGCAT 104559
|||||||| ||||||||
Sbjct 402607 CTTTACAAAAATCTGCAT 402624
>seq12257
Length=1143886
Score = 131 bits (144), Expect = 4e-25
Identities = 149/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || || || | |||||||||||||| || | ||| |||||
Sbjct 1016223 GTTGATTCCTTCTGGATGTTGTAATCCGCGAGAGTTCTACCGTCCTCCAATTGCTTTCCG 1016282
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | || || ||||| || || || ||||| || ||||| ||||| |||||
Sbjct 1016283 GCGAAGATCAACCGTTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTC 1016342
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||||| | ||| |||||||| || || ||||| || || || |||
Sbjct 1016343 ACATTATCGATCGTATCAGAGGATTCAACCTCTAGGGTGATTGTCTTCCCCGTTAGGGTT 1016402
Query 104543 TTTACAAATATCTGCATTTT 104562
|| || || |||||||| ||
Sbjct 1016403 TTCACGAAAATCTGCATCTT 1016422
>seq16938
Length=276168
Score = 125 bits (138), Expect = 2e-23
Identities = 111/139 (80%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| ||||| ||||| | |||||||| | |||||||||||||| || || || || |
Sbjct 257027 TTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCGG 257086
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
|| ||||| || ||||||||||| || || ||||| || || |||||||||||||| |
Sbjct 257087 CAAGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGTG 257146
Query 104451 GTATTCCTTCTTTATCCTG 104469
|||| || ||||| |||||
Sbjct 257147 GTATACCCTCTTTGTCCTG 257165
Score = 120 bits (132), Expect = 7e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| ||||| ||||| | |||||||| | ||||| |||||||| || || || || |
Sbjct 249793 TTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 249734
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
|| ||||| || ||||||||||| || || ||||| || || |||||||||||||| |
Sbjct 249733 CAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTG 249674
Query 104451 GTATTCCTTCTTTATCCTG 104469
|||| || ||||| |||||
Sbjct 249673 GTATACCCTCTTTGTCCTG 249655
>seq16023
Length=121467
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || |||| |||||| | ||| || || || || |||||
Sbjct 25101 GTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCATCCTCGAGCTGCTTTCCG 25160
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||| || || || || ||||| || || || || |||||||||||
Sbjct 25161 GCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCTTTA 25220
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||||| ||| ||||| | || || ||||| || || | |||
Sbjct 25221 ACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTT 25280
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 25281 TTAACGAAGATTTGCAT 25297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151128256028896
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