Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq16577 158 3e-33 seq14499 156 1e-32 seq17130 143 6e-29 seq14413 141 2e-28 seq12257 131 4e-25 seq16938 125 2e-23 seq16023 113 1e-19 >seq16577 Length=433012 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || | ||| | ||| || ||||| | || ||||| ||||| || || || || | Sbjct 33627 CCACCACGTAGACGAAGAACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCA 33686 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||| | ||||||||| |||||||||||||| ||||| | | || ||||| || || Sbjct 33687 AGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGA 33746 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||||||||||||||| ||||| ||||| || | ||||| | ||| || Sbjct 33747 ATTCCTTCTTTATCCTGAATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACT 33806 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| || || ||||| || || |||||||| || Sbjct 33807 TCAAGAGTTATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 33856 >seq14499 Length=662897 Score = 156 bits (172), Expect = 1e-32 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || ||||| | || || ||||||||||||||||| |||| Sbjct 223023 TTCCACCACGAAGACGAAGAACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAG 223082 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| | || ||||| || |||||||| || || || | ||||| || || || | Sbjct 223083 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTG 223142 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCT 104509 | || ||||||||||| || ||||||||||| ||||| || | ||||| | || ||| Sbjct 223143 GGATACCTTCTTTATCTTGGATCTTTGCTTTCACATTATCAATAGTATC-CGAGCTTTCA 223201 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||| || ||||| || | ||| || ||||| |||||||| Sbjct 223202 ACTTCTAATGTAATGGTTTTACCGGTCAATGTCTTAACAAAAATCTGCAT 223251 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| |||||| || | |||| || || || || || ||||| || || Sbjct 223934 ATACCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCG 223993 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || ||||| |||||||| || || || || || ||||| ||||| ||| Sbjct 223994 GCTAAGGTACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGA 224053 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || || || ||||||||||| ||||| || | ||| || || | || Sbjct 224054 GGAATTCCTTCCTTGTCTTGGATCTTTGCTTTAACATTATCGATGGTGTC-TGAGCTCTC 224112 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || || ||||| || |||||||| || || ||||| Sbjct 224113 AACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || | ||| || || ||||||||||| || |||| ||||| | || ||| Sbjct 223496 AGGACCAGGTGAAGTGTTGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCGGCCATCT 223555 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || || || |||||||| || || || || || |||||||| || Sbjct 223556 TCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATACCTTCTTTGTCT 223615 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATA 104524 || ||||| || |||||||| || | ||| || ||| ||| || || | || || Sbjct 223616 TGGATCTTAGCCTTTACATTATCGATGGTGTCTGAGCT---TTCAACTTCCAAAGTTATG 223672 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| ||||| || || |||||||| Sbjct 223673 GTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCAT 223707 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || ||||| ||||||| || || | || ||||| || |||||||| Sbjct 223283 GTTGACTCCTTTTGTATATTGTAGTCAGCTAAGGTACGGCCATCTTCAAGCTGTTTTCCG 223342 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || || || || || || || || |||||||| || || ||||| |||||| Sbjct 223343 GCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTTAGCTTTT 223402 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| ||| || |||| ||| || || ||||| || || ||| Sbjct 223403 ACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTTTTACCGGTTAGGGTT 223462 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 223463 TTGACGAAAATCTGCAT 223479 >seq17130 Length=165301 Score = 143 bits (158), Expect = 6e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| ||||||| | || |||| ||| | || ||||| ||||| ||||| Sbjct 19658 TTCTTTGCTCCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTG 19717 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || |||| || || || |||||||||||||||||||| || ||||||| || || || Sbjct 19718 TAATCAGCTAATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGG 19777 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || || ||||| || || || ||||| | ||| ||||| || | ||||| Sbjct 19778 TCCGGTGGGATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGATTGTATCAGAT 19837 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| ||||| || || || || || || || || ||||| || || |||||||| || Sbjct 19838 GATTCAACCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896 >seq14413 Length=739167 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||| || || || || || || ||||||| || || | || || Sbjct 402640 AAGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATC 402699 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 |||||| ||||| || ||||| || || ||||| || || ||||| ||||||||||| || Sbjct 402700 TTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTC 402759 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| ||||| || | ||| ||| | || ||||||| || || || Sbjct 402760 TTGGATCTTAGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGT 402819 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || |||||||| || ||||| Sbjct 402820 TTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || | || | ||| || || || | ||||| || ||||| ||||| || || | Sbjct 402168 TTCCACCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCCG 402227 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 ||||| | ||||||||| |||||||| || ||||| || || ||||| || || || | Sbjct 402228 CAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGG 402287 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC---GCTAGGTT 104507 | || ||||| || ||||||||||| || || || || || | ||| || ||| || Sbjct 402288 GAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCT---TT 402344 Query 104508 CTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || | ||||||||||| || || | || ||||| || |||||||| Sbjct 402345 CAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTACGAAGATCTGCAT 402396 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || | || || | || ||||| || |||||||| Sbjct 402428 GTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGTTTTCCT 402487 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || || || ||||| || || || || || |||||||| |||||| Sbjct 402488 GCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTAGCTTTT 402547 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | ||| || || | || || ||||| || || || || || ||||| || Sbjct 402548 ACATTGTCAATGGTGTC-TGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTAAGGGT 402606 Query 104542 TTTTACAAATATCTGCAT 104559 |||||||| |||||||| Sbjct 402607 CTTTACAAAAATCTGCAT 402624 >seq12257 Length=1143886 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || || || | |||||||||||||| || | ||| ||||| Sbjct 1016223 GTTGATTCCTTCTGGATGTTGTAATCCGCGAGAGTTCTACCGTCCTCCAATTGCTTTCCG 1016282 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 1016283 GCGAAGATCAACCGTTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTC 1016342 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | ||| |||||||| || || ||||| || || || ||| Sbjct 1016343 ACATTATCGATCGTATCAGAGGATTCAACCTCTAGGGTGATTGTCTTCCCCGTTAGGGTT 1016402 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || |||||||| || Sbjct 1016403 TTCACGAAAATCTGCATCTT 1016422 >seq16938 Length=276168 Score = 125 bits (138), Expect = 2e-23 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| | |||||||| | |||||||||||||| || || || || | Sbjct 257027 TTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGATTCTTTCTGGATGTTGTAATCGG 257086 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||||||||| || || ||||| || || |||||||||||||| | Sbjct 257087 CAAGTGTTCTGCCATCTTCTAGTTGCTTACCGGCAAAGATGAGTCTCTGTTGATCAGGTG 257146 Query 104451 GTATTCCTTCTTTATCCTG 104469 |||| || ||||| ||||| Sbjct 257147 GTATACCCTCTTTGTCCTG 257165 Score = 120 bits (132), Expect = 7e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| | |||||||| | ||||| |||||||| || || || || | Sbjct 249793 TTCCACCTCTAAGCCTCAAGACTAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCCG 249734 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||||||||| || || ||||| || || |||||||||||||| | Sbjct 249733 CAAGTGTTCTTCCATCTTCTAGTTGCTTACCCGCAAAGATGAGTCTCTGTTGATCAGGTG 249674 Query 104451 GTATTCCTTCTTTATCCTG 104469 |||| || ||||| ||||| Sbjct 249673 GTATACCCTCTTTGTCCTG 249655 >seq16023 Length=121467 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || |||| |||||| | ||| || || || || ||||| Sbjct 25101 GTTGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACCATCCTCGAGCTGCTTTCCG 25160 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || ||||| || || || || ||||||||||| Sbjct 25161 GCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCTTTA 25220 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| ||| ||||| | || || ||||| || || | ||| Sbjct 25221 ACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGGTCTTGCCCGTCAAGGTT 25280 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 25281 TTAACGAAGATTTGCAT 25297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151128256028896