Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17130 102 7e-17 seq16023 98.7 8e-16 seq14499 89.7 4e-13 >seq17130 Length=165301 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575 ||||||||||| || ||||| || || ||||||||||| || |||| || |||| | Sbjct 19685 ACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCTAA-TGTCCTGC-CGTCTT 19742 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || || || ||| || ||||||| || ||||| ||| || | || ||||||||| Sbjct 19743 CTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTT 19802 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| |||| | | || ||||| | || || ||| | || || |||| Sbjct 19803 GGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTT 19862 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||||||||| || ||||||||| Sbjct 19863 TCCCCGTGAGAGTTTTCACGAAGATCTGCATC 19894 >seq16023 Length=121467 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || |||||| |||||||||||||||||| ||||| | || | ||||| Sbjct 24405 ACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCA 24464 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| ||| || | || |||||||||| Sbjct 24465 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 24524 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | ||||||| || | |||| |||| || ||||| ||| Sbjct 24525 ATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGGTCTTA 24584 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| | || || |||||||||||||| Sbjct 24585 CCGGTCAAGGTCTTAACAAAAATCTGCAT 24613 >seq14499 Length=662897 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | |||||| | |||| ||| || || |||||||||||| |||||||| || Sbjct 224164 ACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGC 224223 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | || || ||||| || ||| || | || | | |||||| || || Sbjct 224224 TAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||||| | | ||||| |||| |||| Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 224343 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || ||||| || || |||||||||||||| || || |||||| Sbjct 224344 CTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATC 224392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421157186210312