Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq17130 102 7e-17
seq16023 98.7 8e-16
seq14499 89.7 4e-13
>seq17130
Length=165301
Score = 102 bits (112), Expect = 7e-17
Identities = 152/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCCT 48575
||||||||||| || ||||| || || ||||||||||| || |||| || |||| |
Sbjct 19685 ACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCTAA-TGTCCTGC-CGTCTT 19742
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| || || || ||| || ||||||| || ||||| ||| || | || |||||||||
Sbjct 19743 CTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTT 19802
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| ||| |||| | | || ||||| | || || ||| | || || ||||
Sbjct 19803 GGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTT 19862
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
| || |||||||||||||| || |||||||||
Sbjct 19863 TCCCCGTGAGAGTTTTCACGAAGATCTGCATC 19894
>seq16023
Length=121467
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || || |||||| |||||||||||||||||| ||||| | || | |||||
Sbjct 24405 ACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCA 24464
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| || || | || | ||||||||| ||| || | || ||||||||||
Sbjct 24465 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGG 24524
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| || ||| | ||||||| || | |||| |||| || ||||| |||
Sbjct 24525 ATCTTGGCCTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGGTCTTA 24584
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| | || || ||||||||||||||
Sbjct 24585 CCGGTCAAGGTCTTAACAAAAATCTGCAT 24613
>seq14499
Length=662897
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || | |||||| | |||| ||| || || |||||||||||| |||||||| ||
Sbjct 224164 ACCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGC 224223
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || | || || ||||| || ||| || | || | | |||||| || ||
Sbjct 224224 TAAGGTACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||||| | | ||||| |||| ||||
Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTATCGATGGTGTCGGAGCTCTCCAC 224343
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || || |||||||||||||| || || ||||||
Sbjct 224344 CTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATC 224392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421157186210312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |