Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16745 122 5e-23 seq12257 122 5e-23 seq17984 120 2e-22 seq12740 120 2e-22 seq15571 118 6e-22 seq16944 116 2e-21 seq11889 116 2e-21 seq17548 113 2e-20 seq14348 113 2e-20 seq11744 113 2e-20 seq17097 111 8e-20 seq14680 109 3e-19 seq11668 104 1e-17 seq14462 102 4e-17 seq13562 102 4e-17 seq13262 93.3 2e-14 >seq16745 Length=64817 Score = 122 bits (134), Expect = 5e-23 Identities = 90/103 (87%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAA-TAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| || |||| | |||||||| ||| |||||||||| | | |||||||| ||||||| Sbjct 50944 AAACATTAAATTGAGTAAAAAATTAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTT 50885 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||||||||||||||||||| Sbjct 50884 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 50842 >seq12257 Length=1143886 Score = 122 bits (134), Expect = 5e-23 Identities = 85/96 (89%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 11435 AGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||| |||||| || ||| ||| ||||||||| | | |||||||| |||||||||||||| Sbjct 475426 AGATTTAATATAAGAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 475485 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 475486 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 475521 >seq17984 Length=104443 Score = 120 bits (132), Expect = 2e-22 Identities = 79/87 (91%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 28847 AAAACAT-AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 28905 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 28906 GCTCTAACCAACTGAGCTAATGGGCCG 28932 >seq12740 Length=112798 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| |||||| ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 39775 AATTA-TAAAAATAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 39717 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||||||||||||||||| Sbjct 39716 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 39682 >seq15571 Length=549735 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| || ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 394493 AAAAAATAAGTAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 394552 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 394553 GACGCTCTAACCAACTGAGCTAATGGGCC 394581 >seq16944 Length=386166 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 320034 AATGAAAAATAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 319975 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 319974 CGACGCTCTAACCAACTGAGCTAATGGGCC 319945 >seq11889 Length=256106 Score = 116 bits (128), Expect = 2e-21 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || |||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 229360 AAACAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 229301 Query 11508 TRACCAACTGAGCTAATGGGCCG 11530 | ||||||||||||||||||||| Sbjct 229300 TAACCAACTGAGCTAATGGGCCG 229278 >seq17548 Length=75605 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 71135 AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 71194 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 71195 CAACTGAGCTAATGGGCCG 71213 >seq14348 Length=654860 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 242151 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 242092 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 242091 ACTGAGCTAATGGGCC 242076 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 242004 AAATGGCCCATGCAGGATTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 241945 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 241944 AACTGAGCTAATGGGCC 241928 >seq11744 Length=14092 Score = 113 bits (124), Expect = 2e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 9622 AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9681 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| Sbjct 9682 CAACTGAGCTAATGGGCCG 9700 >seq17097 Length=402438 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 135877 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 135936 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 135937 CAACTGAGCTAATGGGCC 135954 >seq14680 Length=376954 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 66660 AATTAAAACAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 66601 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 66600 AACGCTCTAACCAACTGAGCTAATGGGCC 66572 >seq11668 Length=10437 Score = 104 bits (114), Expect = 1e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5574 AAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5633 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 5634 CAACTGAGCTAATAGGCCG 5652 >seq14462 Length=746139 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 539967 AAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 539908 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 539907 CAACTGAGCTAATAGGCC 539890 >seq13562 Length=1494055 Score = 102 bits (112), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||| || | | |||||||| |||||||||||||||||||||||| Sbjct 744136 AAAAAT-AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 744194 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 744195 CTCTAACCAACTGAGCTAATAGGCC 744219 >seq13262 Length=274384 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || | | |||||||| |||||||||||||||||||||||||||| || Sbjct 64505 AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 64564 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 64565 CAACTGAGCTAATAGGCC 64582 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261432841047712