Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq16745 122 5e-23
seq12257 122 5e-23
seq17984 120 2e-22
seq12740 120 2e-22
seq15571 118 6e-22
seq16944 116 2e-21
seq11889 116 2e-21
seq17548 113 2e-20
seq14348 113 2e-20
seq11744 113 2e-20
seq17097 111 8e-20
seq14680 109 3e-19
seq11668 104 1e-17
seq14462 102 4e-17
seq13562 102 4e-17
seq13262 93.3 2e-14
>seq16745
Length=64817
Score = 122 bits (134), Expect = 5e-23
Identities = 90/103 (87%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAA-TAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486
||| || |||| | |||||||| ||| |||||||||| | | |||||||| |||||||
Sbjct 50944 AAACATTAAATTGAGTAAAAAATTAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTT 50885
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct 50884 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 50842
>seq12257
Length=1143886
Score = 122 bits (134), Expect = 5e-23
Identities = 85/96 (89%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 11435 AGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
||| |||||| || ||| ||| ||||||||| | | |||||||| ||||||||||||||
Sbjct 475426 AGATTTAATATAAGAATAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 475485
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||||||||
Sbjct 475486 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 475521
>seq17984
Length=104443
Score = 120 bits (132), Expect = 2e-22
Identities = 79/87 (91%), Gaps = 1/87 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| || ||||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 28847 AAAACAT-AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 28905
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||||||||||||||||||||
Sbjct 28906 GCTCTAACCAACTGAGCTAATGGGCCG 28932
>seq12740
Length=112798
Score = 120 bits (132), Expect = 2e-22
Identities = 84/95 (88%), Gaps = 1/95 (1%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||||| |||||| ||| ||||||||| | | |||||||| |||||||||||||||||
Sbjct 39775 AATTA-TAAAAATAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 39717
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
|||||||||||| ||||||||||||||||||||||
Sbjct 39716 GCACGACGCTCTAACCAACTGAGCTAATGGGCCGT 39682
>seq15571
Length=549735
Score = 118 bits (130), Expect = 6e-22
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||| || ||||||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 394493 AAAAAATAAGTAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 394552
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 394553 GACGCTCTAACCAACTGAGCTAATGGGCC 394581
>seq16944
Length=386166
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||| |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||
Sbjct 320034 AATGAAAAATAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 319975
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 319974 CGACGCTCTAACCAACTGAGCTAATGGGCC 319945
>seq11889
Length=256106
Score = 116 bits (128), Expect = 2e-21
Identities = 75/83 (90%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 11448 AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507
|| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||
Sbjct 229360 AAACAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 229301
Query 11508 TRACCAACTGAGCTAATGGGCCG 11530
| |||||||||||||||||||||
Sbjct 229300 TAACCAACTGAGCTAATGGGCCG 229278
>seq17548
Length=75605
Score = 113 bits (124), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 71135 AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 71194
Query 11512 CAACTGAGCTAATGGGCCG 11530
|||||||||||||||||||
Sbjct 71195 CAACTGAGCTAATGGGCCG 71213
>seq14348
Length=654860
Score = 113 bits (124), Expect = 2e-20
Identities = 70/76 (92%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 242151 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 242092
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||||||||
Sbjct 242091 ACTGAGCTAATGGGCC 242076
Score = 109 bits (120), Expect = 3e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 242004 AAATGGCCCATGCAGGATTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 241945
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||||||||
Sbjct 241944 AACTGAGCTAATGGGCC 241928
>seq11744
Length=14092
Score = 113 bits (124), Expect = 2e-20
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|| |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 9622 AAGTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9681
Query 11512 CAACTGAGCTAATGGGCCG 11530
|||||||||||||||||||
Sbjct 9682 CAACTGAGCTAATGGGCCG 9700
>seq17097
Length=402438
Score = 111 bits (122), Expect = 8e-20
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 135877 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 135936
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 135937 CAACTGAGCTAATGGGCC 135954
>seq14680
Length=376954
Score = 109 bits (120), Expect = 3e-19
Identities = 77/89 (87%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||| |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 66660 AATTAAAACAAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 66601
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| ||||||||||||||||||||
Sbjct 66600 AACGCTCTAACCAACTGAGCTAATGGGCC 66572
>seq11668
Length=10437
Score = 104 bits (114), Expect = 1e-17
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 5574 AAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 5633
Query 11512 CAACTGAGCTAATGGGCCG 11530
||||||||||||| |||||
Sbjct 5634 CAACTGAGCTAATAGGCCG 5652
>seq14462
Length=746139
Score = 102 bits (112), Expect = 4e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 539967 AAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 539908
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 539907 CAACTGAGCTAATAGGCC 539890
>seq13562
Length=1494055
Score = 102 bits (112), Expect = 4e-17
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| ||||||||| || | | |||||||| ||||||||||||||||||||||||
Sbjct 744136 AAAAAT-AAATTGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 744194
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||| ||||
Sbjct 744195 CTCTAACCAACTGAGCTAATAGGCC 744219
>seq13262
Length=274384
Score = 93.3 bits (102), Expect = 2e-14
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||| || | | |||||||| |||||||||||||||||||||||||||| ||
Sbjct 64505 AAAATGGCCTATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 64564
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 64565 CAACTGAGCTAATAGGCC 64582
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261432841047712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |