Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15851 140 5e-29 seq15201 123 4e-24 seq15547 122 1e-23 >seq15851 Length=433742 Score = 140 bits (154), Expect = 5e-29 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| || ||||| ||||| || ||||| || || | ||||| |||||| | || Sbjct 40661 TCTTAGAGACAATATCCAGGGAATTACAAAGCCTGCGATTAGGCGTCTAGCTCGTAGAGG 40720 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| || ||| || ||||||| |||| | | ||| ||||||||||| Sbjct 40721 AGGTGTGAAGCGAATCAGTGGTCTGATCTATGAGGAGACAAGAGGTGTGTTGAAGATCTT 40780 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| |||||| || ||| | ||| || |||||||| | | |||||||| Sbjct 40781 TCTCGAGAATGTTATCAGAGACGCTGTAACCTACACAGAGCACGCCAGGAGAAAGACTGT 40840 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| ||||||| || ||||| | ||||| |||| | || ||||| || Sbjct 40841 GACTGCCATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGG 40900 Query 16693 AAGTTAA 16699 ||||| Sbjct 40901 CGGTTAA 40907 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| |||||||| |||||||||||||| || || | ||| ||||| | | || Sbjct 87608 TCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCGATTAGGCGTTTGGCTAGGAGAGG 87549 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || || || || || |||||||||||| | | || ||||||||||| Sbjct 87548 AGGTGTGAAACGAATCAGCGGTCTGATCTATGAAGAGACCAGAGGAGTCTTGAAGATCTT 87489 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || || ||| | || || |||||||| | | ||||| || Sbjct 87488 CTTGGAGAATGTCATTAGAGACGCTGTGACATACACAGAGCACGCCAGGAGGAAGACGGT 87429 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| ||||||| || | || | ||||| || | | || ||||| || Sbjct 87428 GACTGCCATGGATGTCGTCTACGCCCTCAAGAGGCAAGGACGCACTCTCTACGGTTTCGG 87369 Query 16693 AAGTTAA 16699 ||||| Sbjct 87368 TGGTTAA 87362 Score = 91.5 bits (100), Expect = 2e-14 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||| ||||| || |||||||| ||||| || || | ||| ||||| | | || Sbjct 41869 TCTTAGAGACAACATTCAGGGAATCACTAAGCCTGCGATTAGGCGTTTGGCTAGGAGAGG 41928 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || || || || || || ||||||| |||| | | || ||||||||||| Sbjct 41929 AGGCGTGAAACGAATCAGCGGTCTGATCTATGAGGAGACCAGAGGAGTCTTGAAGATCTT 41988 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || ||| || ||| | || || |||||||| | | ||||| || Sbjct 41989 TTTGGAGAATGTCATCAGAGACGCTGTGACATACACTGAGCACGCCAGGAGGAAGACGGT 42048 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| ||||||| || | ||| | ||||| || | | || ||||| || Sbjct 42049 GACTGCCATGGATGTCGTCTACGCCCTCAAAAGGCAAGGACGCACTCTCTACGGTTTCGG 42108 Query 16693 AAGTTAAT 16700 |||||| Sbjct 42109 TGGTTAAT 42116 >seq15201 Length=197806 Score = 123 bits (136), Expect = 4e-24 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||||||||| || || || || ||| | ||||||||| | || || | Sbjct 159205 GAGATAACATTCAAGGAATCACTAAACCGGCGATTCGTAGACTGGCTCGTAGAGGAGGTG 159264 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| ||| | || || || | ||| | |||| | |||||||| | Sbjct 159265 TGAAGCGTATCAGTGGTTTGATTTACGAGGAAACTCGCGGTGTTCTTAAGATCTTTTTGG 159324 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||||| | ||||||| || || ||||| ||||||||| | |||||||| || Sbjct 159325 AGAATGTTATTCGTGATGCTGTTACA-TATACTGAGCACGCTCGTAGGAAGACTGTTACG 159383 Query 16637 TCCATGGATATCGTCTATGC 16656 |||||||| | || || || Sbjct 159384 GCCATGGATGTTGTTTACGC 159403 >seq15547 Length=381606 Score = 122 bits (134), Expect = 1e-23 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||| || ||||| || || || |||||||| | || || | Sbjct 200291 GAGATAACATCCAAGGAATCACAAAACCAGCGATTCGGCGATTGGCTCGTAGAGGAGGTG 200232 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| || |||||||||||| |||| || | |||||||| | Sbjct 200231 TGAAGCGTATTAGTGGTCTGATCTATGAAGAGACACGTGGCGTACTCAAGATCTTTTTGG 200172 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||||||| |||||| | || || || ||||| | ||||| || ||| Sbjct 200171 AGAATGTTATCCGTGATGCGGTTACTTACACTGAACACGCACGGAGGAAGACGGTGACCG 200112 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| |||| ||||| | || | ||||| | | | ||||| || || ||| Sbjct 200111 CCATGGATGTCGTTTATGCGCTTAAGAGACAAGGAAGAACTCTATATGGATTCGGCGGTT 200052 Query 16698 AA 16699 || Sbjct 200051 AA 200050 Score = 89.7 bits (98), Expect = 8e-14 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||||||||| || ||||| || || || | || ||| | || || | Sbjct 197062 GAGATAACATTCAAGGAATCACGAAACCAGCGATTCGGCGATTAGCGCGTAGAGGAGGTG 197003 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||| || |||||||||||| |||| || | |||||||| | Sbjct 197002 TGAAGCGTATTAGTGGTCTGATCTATGAAGAGACACGTGGCGTACTCAAGATCTTTTTGG 196943 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | || || |||||||| | ||||| || || Sbjct 196942 AGAATGTGATTCGTGATGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTGACTG 196883 Query 16638 CCATGGATATCGTCTATGC 16656 ||||||| |||| || || Sbjct 196882 CCATGGACGTCGTTTACGC 196864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058457210216