Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq15851 140 5e-29
seq15201 123 4e-24
seq15547 122 1e-23
>seq15851
Length=433742
Score = 140 bits (154), Expect = 5e-29
Identities = 179/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| |||| || ||||| ||||| || ||||| || || | ||||| |||||| | ||
Sbjct 40661 TCTTAGAGACAATATCCAGGGAATTACAAAGCCTGCGATTAGGCGTCTAGCTCGTAGAGG 40720
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||||| || ||| || ||||||| |||| | | ||| |||||||||||
Sbjct 40721 AGGTGTGAAGCGAATCAGTGGTCTGATCTATGAGGAGACAAGAGGTGTGTTGAAGATCTT 40780
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| |||||| || ||| | ||| || |||||||| | | ||||||||
Sbjct 40781 TCTCGAGAATGTTATCAGAGACGCTGTAACCTACACAGAGCACGCCAGGAGAAAGACTGT 40840
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| ||||||| || ||||| | ||||| |||| | || ||||| ||
Sbjct 40841 GACTGCCATGGATGTCGTCTACGCTTTGAAGAGGCAAGGACGTACTCTCTACGGTTTCGG 40900
Query 16693 AAGTTAA 16699
|||||
Sbjct 40901 CGGTTAA 40907
Score = 98.7 bits (108), Expect = 2e-16
Identities = 170/247 (69%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| |||| |||||||| |||||||||||||| || || | ||| ||||| | | ||
Sbjct 87608 TCTTAGAGACAACATCCAGGGAATCACCAAGCCTGCGATTAGGCGTTTGGCTAGGAGAGG 87549
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || || || || || || |||||||||||| | | || |||||||||||
Sbjct 87548 AGGTGTGAAACGAATCAGCGGTCTGATCTATGAAGAGACCAGAGGAGTCTTGAAGATCTT 87489
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| | ||| || || || ||| | || || |||||||| | | ||||| ||
Sbjct 87488 CTTGGAGAATGTCATTAGAGACGCTGTGACATACACAGAGCACGCCAGGAGGAAGACGGT 87429
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| ||||||| || | || | ||||| || | | || ||||| ||
Sbjct 87428 GACTGCCATGGATGTCGTCTACGCCCTCAAGAGGCAAGGACGCACTCTCTACGGTTTCGG 87369
Query 16693 AAGTTAA 16699
|||||
Sbjct 87368 TGGTTAA 87362
Score = 91.5 bits (100), Expect = 2e-14
Identities = 169/248 (68%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
|||| |||| ||||| || |||||||| ||||| || || | ||| ||||| | | ||
Sbjct 41869 TCTTAGAGACAACATTCAGGGAATCACTAAGCCTGCGATTAGGCGTTTGGCTAGGAGAGG 41928
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || || || || || || ||||||| |||| | | || |||||||||||
Sbjct 41929 AGGCGTGAAACGAATCAGCGGTCTGATCTATGAGGAGACCAGAGGAGTCTTGAAGATCTT 41988
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
| ||| || ||| || ||| | || || |||||||| | | ||||| ||
Sbjct 41989 TTTGGAGAATGTCATCAGAGACGCTGTGACATACACTGAGCACGCCAGGAGGAAGACGGT 42048
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| ||||||| || | ||| | ||||| || | | || ||||| ||
Sbjct 42049 GACTGCCATGGATGTCGTCTACGCCCTCAAAAGGCAAGGACGCACTCTCTACGGTTTCGG 42108
Query 16693 AAGTTAAT 16700
||||||
Sbjct 42109 TGGTTAAT 42116
>seq15201
Length=197806
Score = 123 bits (136), Expect = 4e-24
Identities = 149/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| ||||||||||| || || || || ||| | ||||||||| | || || |
Sbjct 159205 GAGATAACATTCAAGGAATCACTAAACCGGCGATTCGTAGACTGGCTCGTAGAGGAGGTG 159264
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| || ||| ||| | || || || | ||| | |||| | |||||||| |
Sbjct 159265 TGAAGCGTATCAGTGGTTTGATTTACGAGGAAACTCGCGGTGTTCTTAAGATCTTTTTGG 159324
Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||||| | ||||||| || || ||||| ||||||||| | |||||||| ||
Sbjct 159325 AGAATGTTATTCGTGATGCTGTTACA-TATACTGAGCACGCTCGTAGGAAGACTGTTACG 159383
Query 16637 TCCATGGATATCGTCTATGC 16656
|||||||| | || || ||
Sbjct 159384 GCCATGGATGTTGTTTACGC 159403
>seq15547
Length=381606
Score = 122 bits (134), Expect = 1e-23
Identities = 172/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||| || ||||| || || || |||||||| | || || |
Sbjct 200291 GAGATAACATCCAAGGAATCACAAAACCAGCGATTCGGCGATTGGCTCGTAGAGGAGGTG 200232
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||| || |||||||||||| |||| || | |||||||| |
Sbjct 200231 TGAAGCGTATTAGTGGTCTGATCTATGAAGAGACACGTGGCGTACTCAAGATCTTTTTGG 200172
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||||||| |||||| | || || || ||||| | ||||| || |||
Sbjct 200171 AGAATGTTATCCGTGATGCGGTTACTTACACTGAACACGCACGGAGGAAGACGGTGACCG 200112
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
|||||||| |||| ||||| | || | ||||| | | | ||||| || || |||
Sbjct 200111 CCATGGATGTCGTTTATGCGCTTAAGAGACAAGGAAGAACTCTATATGGATTCGGCGGTT 200052
Query 16698 AA 16699
||
Sbjct 200051 AA 200050
Score = 89.7 bits (98), Expect = 8e-14
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| ||||||||||| || ||||| || || || | || ||| | || || |
Sbjct 197062 GAGATAACATTCAAGGAATCACGAAACCAGCGATTCGGCGATTAGCGCGTAGAGGAGGTG 197003
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
| |||||| | ||| || |||||||||||| |||| || | |||||||| |
Sbjct 197002 TGAAGCGTATTAGTGGTCTGATCTATGAAGAGACACGTGGCGTACTCAAGATCTTTTTGG 196943
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || || | |||||| | || || |||||||| | ||||| || ||
Sbjct 196942 AGAATGTGATTCGTGATGCCGTTACTTACACTGAGCACGCACGGAGGAAGACGGTGACTG 196883
Query 16638 CCATGGATATCGTCTATGC 16656
||||||| |||| || ||
Sbjct 196882 CCATGGACGTCGTTTACGC 196864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79058457210216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |