Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq11797 605 4e-168 seq17927 587 1e-162 >seq11797 Length=28381 Score = 605 bits (670), Expect = 4e-168 Identities = 711/957 (74%), Gaps = 6/957 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | |||||||| || ||||| || || | || |||||||| || Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGCTTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| ||| | | | || || | |||||| | || || || ||||| || Sbjct 1340 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || |||||||| || || || ||||||||| |||| ||||| | |||||||| || Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1222 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || || ||||| |||| ||| || ||| || ||||| | || || || || Sbjct 1221 TATTATTTCAGGTGCAATTATTCCTACTTCTGCA--GCTATCGGTTTGCATTTTTACCCA 1164 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || ||||||||||| || ||||||| |||||||| || |||||||||||| ||||| | Sbjct 1163 ATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1104 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | ||||| | | ||||| | ||| |||||||| ||||||||||| || | Sbjct 1103 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1044 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || |||||||||| ||||||||| ||| || || ||||| |||||||| ||||||||| Sbjct 1043 CGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 984 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 || |||||| || |||| || |||| ||||| || |||||||||||| || || Sbjct 983 GCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 924 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| |||| |||| |||| |||||||| || || |||||||| ||||| Sbjct 923 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCAC 864 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || || |||||||| || || ||||| || ||||| || || || || |||||||||| Sbjct 863 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 804 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || ||| | || || |||||| | | | || || || || ||||| || | Sbjct 803 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 744 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 743 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 684 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||| | Sbjct 683 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 624 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 || |||||||| || || ||||| |||||| |||| | || | ||| ||||| || Sbjct 623 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTT 564 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||| | ||||||||||| |||||||| || | || | | |||| ||||| | || Sbjct 563 AACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAAT 504 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 || ||||| ||| | | || |||||| || |||||||| || ||||| || ||| Sbjct 503 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 447 >seq17927 Length=56337 Score = 587 bits (650), Expect = 1e-162 Identities = 739/1009 (73%), Gaps = 12/1009 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || ||||| || ||||| ||||||||||| ||| | || | Sbjct 4014 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 4073 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || || ||||| ||||| || | Sbjct 4074 TTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 4133 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| || || || ||||| | ||| | ||||| ||||| | || || || | Sbjct 4134 GGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGG 4193 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| ||||||||| || | | | ||||| | | |||| ||||||||||| | | Sbjct 4194 TTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCAC 4253 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | || |||| ||| | || || || ||||||||||| || ||||||| Sbjct 4254 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACG 4313 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || ||| | || || ||||| | |||| |||| | | Sbjct 4314 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTT---C 4370 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || |||||||||||||||||||| || ||||| || || || | Sbjct 4371 AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCT 4430 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 |||| || ||||| | |||||||| ||||||||||||| || |||||||| || | Sbjct 4431 TCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGG 4490 Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || |||| |||| || |||| ||||||| ||||| ||||| | ||||| | Sbjct 4491 CTATTTTTCGATTTATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCAT 4547 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || ||| | || || | |||||||| || ||||||||||||| Sbjct 4548 TTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTG 4607 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||||||||| | ||||||||| || ||||||| || || ||| Sbjct 4608 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTA 4667 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||| Sbjct 4668 ACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAA 4727 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || | Sbjct 4728 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGG 4787 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 | | ||| | |||| ||| | |||| | | ||||| ||| | |||||||| || | Sbjct 4788 TAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCT 4847 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| || || || || ||||| |||||||| |||||||| ||||| ||||| ||||||| Sbjct 4848 ATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACA 4907 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 | || || |||||| | || |||||| | ||||| |||||||| || ||||| |||| Sbjct 4908 CTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 4967 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | |||||| || | || ||||| || || | ||| | || |||||||| Sbjct 4968 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627824258124800