Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq11797 520 3e-143 >seq11797 Length=28381 Score = 520 bits (576), Expect = 3e-143 Identities = 710/986 (72%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| ||||| | || |||||||| || | Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| | ||||| |||| ||||| || || || Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || ||| | |||| | || || || || |||| ||||| || || Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 || || ||| | || ||||| || |||||| |||| || | |||| ||| ||| Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || || |||| ||||| || ||| ||||||||||||||| || || Sbjct 980 GT-TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 922 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||| ||| | |||||||| || || || || || |||||||| || Sbjct 921 CTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCC 862 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 861 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 802 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 |||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 801 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 742 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || || || ||||| ||||| || || || ||||| Sbjct 741 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 682 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 681 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 622 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||| || || Sbjct 621 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAA 562 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | ||||| || || || ||||| || ||||||||| ||||| || | | || | Sbjct 561 CTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTG-TTATTAATA 503 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 502 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 443 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 |||| |||||||| || || ||||| Sbjct 442 CTCACAACTTCCCTCTAGACCTAGCT 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144410190451872