Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq11797 524 9e-144 seq17927 401 7e-107 >seq11797 Length=28381 Score = 524 bits (580), Expect = 9e-144 Identities = 722/1002 (72%), Gaps = 6/1002 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || | ||| ||| | ||||| || |||||||| Sbjct 1340 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCC 1282 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 170843 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 1281 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 1223 Query 170844 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 170903 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 1222 ATATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAA 1163 Query 170904 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTA 170963 | |||||||| || | | || || ||| | |||||||| |||||||| | || || Sbjct 1162 TTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTG 1103 Query 170964 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 1102 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 1043 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | | || ||| | |||||||| ||| ||||| ||||| ||||| | || || || Sbjct 1042 GTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 983 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 |||| ||| | | ||||| | ||||| || || |||||||||||||| ||||| | Sbjct 982 CAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 923 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 |||| ||||| |||||||||||| | || ||||| || || || ||||| || ||||||| Sbjct 922 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACC 863 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | || || ||| ||||||||| ||| | ||||| || || || ||||| ||||| | Sbjct 862 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 803 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 ||||| | || || ||| | | ||||| || || || || || || | || | | Sbjct 802 GTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 743 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || | ||||| |||||||||||||| || |||||||| ||||||||||| || || | Sbjct 742 GTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 683 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | | Sbjct 682 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 623 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 | | | || ||||| || | ||||| || || | ||||| |||| |||||||| | Sbjct 622 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTA 563 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCA 171562 || | || |||||||| ||||||||||| || || ||| | || || | || | Sbjct 562 ACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTG-TTATTAAT 504 Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| || ||||| | || |||||||| |||||||||||||||||| | ||| Sbjct 503 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 444 Query 171623 GCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 171664 || ||||||||||| ||||||||||| || |||| || || Sbjct 443 GCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAGGCTCCA 402 >seq17927 Length=56337 Score = 401 bits (444), Expect = 7e-107 Identities = 718/1049 (68%), Gaps = 21/1049 (2%) Strand=Plus/Plus Query 171784 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 171843 ||| ||| | ||||| || | ||||| |||||| ||| || || ||||| || | | Sbjct 3993 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAG 4052 Query 171844 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 171903 | ||||||||||| || || || |||||||| || | || | || ||||||||| || Sbjct 4053 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAG 4112 Query 171904 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 171963 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 4113 GTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTT 4172 Query 171964 CAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 172023 || |||||||| || || || || || |||| | || | | | ||| | |||| Sbjct 4173 GCAATTTTTTAACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGT 4232 Query 172024 TCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 172083 | || ||||| ||||| |||||||||||| || || |||| |||||||||||| || | Sbjct 4233 TACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGT 4292 Query 172084 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 172143 ||| ||||| || | || || | || | | | |||||||| ||| | | || |||| Sbjct 4293 GGACTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTG 4352 Query 172144 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTG 172203 | |||| || |||| | || ||||| || ||| | |||||||| | |||| Sbjct 4353 AACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTG 4412 Query 172204 CAGTATTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCAC 172263 | || || |||| ||||| |||||| ||||||| | |||||||||| || | Sbjct 4413 CTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGC 4472 Query 172264 CTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 172323 || |||||||| || || || ||||| | ||| | || | || || || || ||| Sbjct 4473 CTAGTTTTGGTGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATT 4532 Query 172324 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 172383 || | || ||||||||||||||||| || || ||| |||| || | || | |||| Sbjct 4533 GGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTAT 4592 Query 172384 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 172443 | || || |||||||| || ||| | || || || | |||||| || Sbjct 4593 GCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA---------------TG 4637 Query 172444 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTT 172503 | | | | ||| |||| ||| | || || | || || || | |||||||||| Sbjct 4638 --GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 4691 Query 172504 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 172563 || ||| | || |||||| | || |||||||| || ||||| | || ||||| || | Sbjct 4692 ATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 4751 Query 172564 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 172623 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 4752 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 4811 Query 172624 TAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAA 172683 | || | || ||||| || | ||||| | || || |||||||| || || || || Sbjct 4812 TTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCC 4871 Query 172684 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 172743 | ||||| ||||| || || ||||| || ||||||||||| || |||||| | || |||| Sbjct 4872 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAG 4931 Query 172744 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 172803 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 4932 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 4991 Query 172804 AAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | ||||| || ||||| || ||| Sbjct 4992 AGGTTCTACCACGTGGAAACGCTCTTTAA 5020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570138265471680