Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq16938 111 2e-19
seq14499 107 2e-18
seq16577 91.5 1e-13
seq14413 86.0 6e-12
>seq16938
Length=276168
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|||||||| || ||||| || |||||||| |||||||| | | ||| || ||||| |||
Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| |||| | ||| || ||||| || |||||||||||| | ||||| ||| ||
Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043
Query 26982 AGACTTAGAGGAGGAA 26997
|| |||||||| ||||
Sbjct 257042 AGGCTTAGAGGTGGAA 257027
>seq14499
Length=662897
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827
|||||| | || |||||||| | ||||| ||| | ||||| |||| | || | | |
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||||||||||| | || ||| |||||| ||||| ||||| || ||||| |||||
Sbjct 224103 -GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| ||||| || | || ||||||||||||||||||| | | | | ||| || ||
Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| || || ||| | || |||| || || | ||||| ||
Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| |||| || ||| | ||||| | ||| | ||| |
Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || ||| ||||| ||||||||||| || || || || ||
Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
||||||||||| | || ||| ||||| || ||||||| | || | ||| ||||| ||
Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCG-TACCTTAGCTGACTACAA 223301
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|| ||||| || || ||| | || |||||||||
Sbjct 223300 TATACAAAAGGAGTCAACTCTTCACCTGGTCCTG 223267
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | || || ||| | |||||| | ||| | ||
Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | ||||| |||||| |||||||||||||| || || ||||||
Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||||||||||| | || || ||||| ||||| || | | | | | | ||||| |||
Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756
Query 26949 ATTCAAAAAGAATCTAC 26965
|| ||||| ||||| ||
Sbjct 223755 ATCCAAAAGGAATCAAC 223739
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || ||||| | ||||| || | || || |||| | || |
Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | ||||| |||||| ||||| ||||| || ||||| || ||
Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||||| || | || ||||||||| |||||||||| | | | | ||| || ||
Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983
|||||||| || || || ||||||| || || ||
Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAG 224177
>seq16577
Length=433012
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || ||| |||| || | ||| | ||||||
Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|| || ||||| | |||||| |||||| || |||||||| || || || |||
Sbjct 33796 TCAGATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGAT 33737
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||| | | |||| || || |||||||||||||| | | | | | ||| ||
Sbjct 33736 CAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTAC 33677
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || ||||| || | ||||| || ||
Sbjct 33676 AACATCCAGAAGGAATCGACGCTTCATCTCGTTCT 33642
>seq14413
Length=739167
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | |||||||| || | || || ||| | ||||| | || | || |
Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | |||||| ||||| ||||||||||| || ||||| || ||
Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| ||||| || | | ||| ||||| || ||||||| | | | | ||||| |||
Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| || || || ||||||| || ||
Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTGCT 402641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827
|||||| | || || |||||| | ||||| || | ||||| |||| |||| | | |
Sbjct 404353 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTAGAGAGCTCA 404294
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||||||||||| | ||||| ||||| ||||| || || || ||||| || ||
Sbjct 404293 -GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 404235
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| ||||| || | | ||| ||||| ||||| |||| | | | ||||| ||
Sbjct 404234 GCAGAGACTAATCTTTGCCGGTAAACAGCTCGAGGATGGACGTACTCTTGCAGACTACAA 404175
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| ||||| || || || ||||||| |||||
Sbjct 404174 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCT 404142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478552834176640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |