Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq16938 111 2e-19 seq14499 107 2e-18 seq16577 91.5 1e-13 seq14413 86.0 6e-12 >seq16938 Length=276168 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || ||||| || |||||||| |||||||| | | ||| || ||||| ||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| | ||| || ||||| || |||||||||||| | ||||| ||| || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043 Query 26982 AGACTTAGAGGAGGAA 26997 || |||||||| |||| Sbjct 257042 AGGCTTAGAGGTGGAA 257027 >seq14499 Length=662897 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | || |||||||| | ||||| ||| | ||||| |||| | || | | | Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || ||| |||||| ||||| ||||| || ||||| ||||| Sbjct 224103 -GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCA 224045 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||||| || | || ||||||||||||||||||| | | | | ||| || || Sbjct 224044 GCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAA 223985 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || || ||| | || |||| || || | ||||| || Sbjct 223984 TATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || ||| | ||||| | ||| | ||| | Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| ||||||||||| || || || || || Sbjct 223419 GACACCATCGATAATGTAAAAGCTAAGATCCAAGACAAAGAAGGTATCCCACCAGACCAG 223360 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||||||||| | || ||| ||||| || ||||||| | || | ||| ||||| || Sbjct 223359 CAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCG-TACCTTAGCTGACTACAA 223301 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || ||||| || || ||| | || ||||||||| Sbjct 223300 TATACAAAAGGAGTCAACTCTTCACCTGGTCCTG 223267 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || ||| | |||||| | ||| | || Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||| |||||||||||||| || || |||||| Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || || ||||| ||||| || | | | | | | ||||| ||| Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756 Query 26949 ATTCAAAAAGAATCTAC 26965 || ||||| ||||| || Sbjct 223755 ATCCAAAAGGAATCAAC 223739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | ||||| || | || || |||| | || | Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || ||||||||| |||||||||| | | | | ||| || || Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 |||||||| || || || ||||||| || || || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAG 224177 >seq16577 Length=433012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| |||| || | ||| | |||||| Sbjct 33856 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACGATAACTCTTGAAGTCGAATCA 33797 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | |||||| |||||| || |||||||| || || || ||| Sbjct 33796 TCAGATACAATCGACAATGTCAAAGCCAAGATTCAGGATAAAGAAGGAATTCCACCGGAT 33737 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | |||| || || |||||||||||||| | | | | | ||| || Sbjct 33736 CAGCAACGTTTGATTTTCGCTGGAAAACAACTCGAAGACGGTCGTACTCTTGCCGATTAC 33677 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || | ||||| || || Sbjct 33676 AACATCCAGAAGGAATCGACGCTTCATCTCGTTCT 33642 >seq14413 Length=739167 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | || || ||| | ||||| | || | || | Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| ||||| ||||||||||| || ||||| || || Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | | ||| ||||| || ||||||| | | | | ||||| ||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || ||||||| || || Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTGCT 402641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA-ATCAAA 26827 |||||| | || || |||||| | ||||| || | ||||| |||| |||| | | | Sbjct 404353 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTAGAGAGCTCA 404294 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 404293 -GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 404235 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || ||||| || | | ||| ||||| ||||| |||| | | | ||||| || Sbjct 404234 GCAGAGACTAATCTTTGCCGGTAAACAGCTCGAGGATGGACGTACTCTTGCAGACTACAA 404175 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || || || ||||||| ||||| Sbjct 404174 CATCCAAAAGGAGTCCACCCTCCATCTTGTCCT 404142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478552834176640