Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq14680 122 2e-22 seq15310 91.5 4e-13 seq12648 84.2 6e-11 >seq14680 Length=376954 Score = 122 bits (134), Expect = 2e-22 Identities = 172/237 (73%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 363608 GCTTTCTTCTAAAA---ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 ||| | |||||| | |||||||| ||| ||| |||||||| | ||| |||||||| Sbjct 229446 GCTGTTTTCTAATATGTATGAAGGATGATAGCATTGAGGGTATATATGATACACTTAAAG 229387 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 | |||||| |||| ||| ||| || || |||||||| ||| | || ||| | |||| Sbjct 229386 AGTGTGCTGTTATAAGCAAATCTGCTGGTGGTATTGGTGTTTCGGTTCATAATATACGTG 229327 Query 363725 CA-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || | | | ||||||||||| || ||| ||| || ||||| | ||||| ||||| Sbjct 229326 CAACTGGA-AGTTACATTCGTGGTACAAATGGAACATCTAATGGTATTGTTCCAATGCTG 229268 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 | |||||| | ||||||| | || || ||||| || ||||| ||| | |||||| Sbjct 229267 AGGGTGTTTAATGATACTGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 229212 >seq15310 Length=176306 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 |||||||||||| || || ||||||||| ||||||||||| || || || ||||| Sbjct 56646 CAGTTTTATGTAGCAGAAGGTGAGCTTTCATGTCAAATGTATCAACGTTCAGCAGATATG 56705 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || |||||||| || || || |||||| ||| | || ||||| || ||| | |||||| Sbjct 56706 GGACTTGGTGTACCTTTCAACATTGCATCTTATTCTCTTCTTACATGTTTACTAGCTCAT 56765 Query 111822 TTT 111824 || Sbjct 56766 GTT 56768 >seq12648 Length=147898 Score = 84.2 bits (92), Expect = 6e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 |||||||| ||||||||||| || || |||||||| ||||| || || |||||||| ||| Sbjct 12783 CTTTCATGTCAAATGTATCAACGGTCCGCTGATATGGGTCTCGGCGTGCCGTTTAACATT 12842 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| | || || || || || | |||||| Sbjct 12843 GCATCTTACTCTCTTCTGACATGTATACTTGCTCAT 12878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303047803919984