Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq14680 122 2e-22
seq15310 91.5 4e-13
seq12648 84.2 6e-11
>seq14680
Length=376954
Score = 122 bits (134), Expect = 2e-22
Identities = 172/237 (73%), Gaps = 6/237 (3%)
Strand=Plus/Minus
Query 363608 GCTTTCTTCTAAAA---ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664
||| | |||||| | |||||||| ||| ||| |||||||| | ||| ||||||||
Sbjct 229446 GCTGTTTTCTAATATGTATGAAGGATGATAGCATTGAGGGTATATATGATACACTTAAAG 229387
Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724
| |||||| |||| ||| ||| || || |||||||| ||| | || ||| | ||||
Sbjct 229386 AGTGTGCTGTTATAAGCAAATCTGCTGGTGGTATTGGTGTTTCGGTTCATAATATACGTG 229327
Query 363725 CA-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783
|| | | | ||||||||||| || ||| ||| || ||||| | ||||| |||||
Sbjct 229326 CAACTGGA-AGTTACATTCGTGGTACAAATGGAACATCTAATGGTATTGTTCCAATGCTG 229268
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840
| |||||| | ||||||| | || || ||||| || ||||| ||| | ||||||
Sbjct 229267 AGGGTGTTTAATGATACTGCTCGTTATGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 229212
>seq15310
Length=176306
Score = 91.5 bits (100), Expect = 4e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761
|||||||||||| || || ||||||||| ||||||||||| || || || |||||
Sbjct 56646 CAGTTTTATGTAGCAGAAGGTGAGCTTTCATGTCAAATGTATCAACGTTCAGCAGATATG 56705
Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
|| |||||||| || || || |||||| ||| | || ||||| || ||| | ||||||
Sbjct 56706 GGACTTGGTGTACCTTTCAACATTGCATCTTATTCTCTTCTTACATGTTTACTAGCTCAT 56765
Query 111822 TTT 111824
||
Sbjct 56766 GTT 56768
>seq12648
Length=147898
Score = 84.2 bits (92), Expect = 6e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785
|||||||| ||||||||||| || || |||||||| ||||| || || |||||||| |||
Sbjct 12783 CTTTCATGTCAAATGTATCAACGGTCCGCTGATATGGGTCTCGGCGTGCCGTTTAACATT 12842
Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
||| |||| | || || || || || | ||||||
Sbjct 12843 GCATCTTACTCTCTTCTGACATGTATACTTGCTCAT 12878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303047803919984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |