Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq14499 122 7e-23 seq16938 109 5e-19 seq16023 86.0 5e-12 seq14413 86.0 5e-12 seq16726 82.4 7e-11 >seq14499 Length=662897 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | ||||| || | ||||| |||| || ||| | | Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || |||||| || |||||||||| | | | | | |||||| || Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || | ||| |||| | || ||||| || || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGG 224165 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||| | ||||| ||| | || || |||| || ||| | Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| ||||| || ||||| ||||| Sbjct 224103 GACACCATCGATAATGTTAAAGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGATCAG 224044 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||||| ||||||||||||| | | | | | |||||| || Sbjct 224043 CAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACAAT 223984 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || || || | || || || | || || ||||| || Sbjct 223983 ATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || ||| | || ||| | ||||||||| | Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||||||||| || || || |||||| Sbjct 223875 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAAGAAGGGATCCCACCAGATCAA 223816 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || || || || ||||| || | | | | | || || ||| Sbjct 223815 CAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTACAAC 223756 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| ||||| || |||||||||| | | || ||||| || Sbjct 223755 ATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGG 223709 >seq16938 Length=276168 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || |||||||||||||| || | | ||| |||||||| ||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||||| | |||||| ||||| || ||||||||||| ||||| |||| || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043 Query 24204 AGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 257042 AGGCTTAGAGGTGGA 257028 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||| || ||||| || |||||||||||||| || | | || |||||||| ||| Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717 Query 24144 GATGACAGAA-ACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| |||| || | | ||||| ||||| || ||||| ||||| ||||| |||| || Sbjct 249718 GATGGAAGAACACTTGCG-GATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTT 249776 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 249777 GAGGCTTAGAGGTGGA 249792 >seq16023 Length=121467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || || |||||||| | || || ||| | | Sbjct 25525 ATGCAAATCTTCGTCAAAACCCTAACGGGCAAGACGATTACCTTGGAGGTTGAGAGCTCC 25466 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| || || ||||| || ||||| || || Sbjct 25465 GACACCATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAG 25406 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || || |||||||| || | | | | | | || || ||| Sbjct 25405 CAGAGGTTGATCTTCGCTGGTAAACAACTCGAGGACGGCCGTACCTTGGCTGACTACAAC 25346 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 25345 ATCCAGAAAGAGTCGAC 25329 >seq14413 Length=739167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | |||||||| || | || || ||| | || || | || || ||| | Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| ||||| ||||||||||| || ||||| || || Sbjct 402792 GACACCATTGACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAG 402733 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | ||| || || || ||||||| | | | | | || || ||| Sbjct 402732 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAAC 402673 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || ||| | ||| | ||| Sbjct 402672 ATCCAAAAGGAGTCCACACTCCATCTTGTG 402643 >seq16726 Length=336357 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/176 (71%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 23975 TTTTTAGCCAAA--CAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTAC 24031 || |||||| || |||| ||||| | || || ||||| |||| || || | || || Sbjct 61096 TTGTTAGCCCAAAGCAAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATCAC 61155 Query 24032 CATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGA 24091 |||| ||||| || ||||||||||| | ||||| ||||| ||||| || Sbjct 61156 TCTCGAGGTCGAATCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGA 61215 Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| || || || || || ||| || |||||| || ||| ||||| ||||| |||| Sbjct 61216 AGGAATTCCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAGGATG 61271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429840047958360