Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq14413 86.0 5e-12 seq16938 84.2 2e-11 >seq14413 Length=739167 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || || || || |||||||| || | || ||| | Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || ||| || || || |||||||| |||| || || Sbjct 402792 GACACCATT-GACAATGTCAAAGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 402734 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| |||||||| | ||| || ||||| ||||||||| | ||| | || || || || Sbjct 402733 GCAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTACAA 402674 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||| ||||| ||||| || | ||| | ||| Sbjct 402673 CATCCAAAAGGAGTCCACACTCCATCTTGTG 402643 >seq16938 Length=276168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||||| || ||||| || | |||||| || ||| ||||||||| | ||| | || || Sbjct 249678 TGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAAGATGGAAGAACACTTGCGGA 249737 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| || |||||||||||| | ||| | || ||||| | |||| |||| Sbjct 249738 TTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTTGAGGCTTAGAGGTGGAA 249793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425249072789440