Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq16023 93.3 3e-14 seq14413 87.8 1e-12 >seq16023 Length=121467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||||||||| ||||||||||| || | ||| | ||| Sbjct 24402 AGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCC 24461 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || || ||||| |||||| ||| | || || ||||| Sbjct 24462 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCC 24521 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | ||||| | |||| ||| | ||| |||| Sbjct 24522 TGGATCTTGGC--CTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGG 24579 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || || |||||||||||||| Sbjct 24580 TCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || ||||| ||||| || || ||||||||||| ||| Sbjct 25299 CCACCACGAAGCCTGAGGACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCC 25358 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | |||||| || || | || | || ||| |||||| ||| Sbjct 25359 AAGGTACGGCCGTCCTCGAGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 25418 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || || ||| || || | | | | |||||| | ||| Sbjct 25419 ATACCTTCCTTATCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCAA 25476 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || || || || |||||||| || || ||||| Sbjct 25477 CCTCCAAGGTAATCGTCTTGCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || |||| ||| || || |||||||| || |||||||||||||| Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || || | || || || || |||||| || Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | | ||||| | ||| Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCT--TTAACGTTGTCGATGGTGTCAGAGCTCTCAA 24792 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| ||||||| ||||| || || |||||||| Sbjct 24793 CCTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841 >seq14413 Length=739167 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || |||||||||||||| ||||||||||| || | ||| | | || Sbjct 402641 AGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCT 402700 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || ||| | ||||| | ||| ||||| ||| | || |||||||| Sbjct 402701 TCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCT 402760 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | |||||| ||| || | ||||||| Sbjct 402761 TGGATCTTAGCT--TTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGG 402818 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || || |||||||| ||||| Sbjct 402819 TTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| ||||||||||| || | || | | ||||| | |||| Sbjct 403106 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAGTACGGCCATCCTCAAGTTGT 403165 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || || | || |||||| ||| | ||||| ||||| || || Sbjct 403166 TTACCGGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTG 403225 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||| || | |||||||||||| || | Sbjct 403226 GC--CTTGACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTTACCAG 403283 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||| || ||||| Sbjct 403284 TGAGAGTCTTGACAAAGATTTGCAT 403308 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| ||||||||||||||||| || | ||| | | ||||| | ||| Sbjct 403334 TGGAGTGTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGT 403393 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||| | || |||||| ||| | ||||| ||||| || ||| Sbjct 403394 TTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTT 403453 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| | |||| || | ||||| ||||| || | Sbjct 403454 GC--CTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAG 403511 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || || ||||| Sbjct 403512 TGAGAGTCTTGACGAAGATTTGCAT 403536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404997593472880