Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq16023 93.3 3e-14
seq14413 87.8 1e-12
>seq16023
Length=121467
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || |||||||||||||| ||||||||||| || | ||| | |||
Sbjct 24402 AGGACCAAGTGGAGTGTGGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTGCGACCATCC 24461
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || || || || | || || ||||| |||||| ||| | || || |||||
Sbjct 24462 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCC 24521
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | | ||||| | |||| ||| | ||| ||||
Sbjct 24522 TGGATCTTGGC--CTTCACGTTGTCTATGGTGTCAGAGCTCTCCACTTCGAGGGTAATGG 24579
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || ||||||| || || ||||||||||||||
Sbjct 24580 TCTTACCGGTCAAGGTCTTAACAAAAATCTGCAT 24613
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || |||| || ||||| ||||| || || ||||||||||| |||
Sbjct 25299 CCACCACGAAGCCTGAGGACCAAGTGGAGCGTCGACTCTTTCTGGATGTTGTAGTCAGCC 25358
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | |||||| || || | || | || ||| |||||| |||
Sbjct 25359 AAGGTACGGCCGTCCTCGAGTTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGAGGG 25418
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || || || || || ||| || || | | | | |||||| | |||
Sbjct 25419 ATACCTTCCTTATCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCAA 25476
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||| || || || || || || |||||||| || || |||||
Sbjct 25477 CCTCCAAGGTAATCGTCTTGCCCGTTAGGGTTTTGACGAAGATTTGCAT 25525
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| ||| || || |||||||| || ||||||||||||||
Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||| | || || || || | || || || || |||||| ||
Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||||||||| || || ||| || || | | | | ||||| | |||
Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCT--TTAACGTTGTCGATGGTGTCAGAGCTCTCAA 24792
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||||||| ||||||| ||||| || || ||||||||
Sbjct 24793 CCTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841
>seq14413
Length=739167
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || |||||||||||||| ||||||||||| || | ||| | | ||
Sbjct 402641 AGCACAAGATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCT 402700
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||||| || ||| | ||||| | ||| ||||| ||| | || ||||||||
Sbjct 402701 TCTAGCTGTTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCT 402760
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | | |||||| ||| || | |||||||
Sbjct 402761 TGGATCTTAGCT--TTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGG 402818
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| || || || |||||||| |||||
Sbjct 402819 TTTTGCCGGTAAGGGTCTTTACAAAAATTTGCAT 402852
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||||||||| ||||||||||| || | || | | ||||| | ||||
Sbjct 403106 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCTGCTAAAGTACGGCCATCCTCAAGTTGT 403165
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | || || | || |||||| ||| | ||||| ||||| || ||
Sbjct 403166 TTACCGGCAAAGATTAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTG 403225
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | |||| || | |||||||||||| || |
Sbjct 403226 GC--CTTGACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGGGTGATGGTTTTACCAG 403283
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || |||||||| || |||||
Sbjct 403284 TGAGAGTCTTGACAAAGATTTGCAT 403308
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||| ||||||||||||||||| || | ||| | | ||||| | |||
Sbjct 403334 TGGAGTGTGGACTCTTTTTGTATGTTGTAGTCTGCAAGGGTGCGGCCATCCTCGAGCTGT 403393
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | ||||| | || |||||| ||| | ||||| ||||| || |||
Sbjct 403394 TTACCGGCAAAGATAAGTCTTTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTT 403453
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | ||||| | |||| || | ||||| ||||| || |
Sbjct 403454 GC--CTTGACATTGTCAATGGTGTCCGAGCTCTCCACCTCGAGAGTGATTGTTTTACCAG 403511
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| || || |||||
Sbjct 403512 TGAGAGTCTTGACGAAGATTTGCAT 403536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404997593472880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |