Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq14462 208 1e-48 seq14680 109 7e-19 seq16652 100 4e-16 >seq14462 Length=746139 Score = 208 bits (230), Expect = 1e-48 Identities = 415/601 (69%), Gaps = 14/601 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| ||||||||||| || || || ||||||| ||||| |||||||| || || Sbjct 137942 CAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGT 137883 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 |||||| ||||| || || || ||||||||||| || ||||| ||| | | || || | Sbjct 137882 GAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAACTACCGGAGA 137824 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG---GCGCTGT 32832 |||| || ||||| || || ||||| || | | |||| || | | | | Sbjct 137823 AGAAGATACCTTCAACGCAGGCGAAGGC--TACGATACGCTCCGCAAAGGTTTGAGATC- 137767 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | | ||||| | ||||| | || ||||| ||||| || ||||| || || | Sbjct 137766 CGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTG 137707 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | |||||||| || | |||| || | || || | || ||||||| | ||||||| Sbjct 137706 CGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTAT 137647 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCG 33011 |||| ||||||||||| || ||||| || ||||||||||||||| ||||| | ||||| Sbjct 137646 ACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCA-CGCGCCTCC 137588 Query 33012 GTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 33070 | | ||| || || | ||| ||||| ||| | ||| || || || || ||| Sbjct 137587 GATACCTGAACATC-GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGA 137529 Query 33071 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAGTTTAT 33129 ||| || || || || || ||||| || || || | | |||| | | || ||| || | Sbjct 137528 GGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGT-TTAAATTCT 137470 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 |||||| || | |||| ||| ||||| || | |||||||| || ||||| | Sbjct 137469 CCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGG 137410 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249 |||| || ||||| | |||||| | | |||||||| || || ||| |||||| | || Sbjct 137409 CCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTG 137350 Query 33250 G 33250 | Sbjct 137349 G 137349 >seq14680 Length=376954 Score = 109 bits (120), Expect = 7e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | || | ||| || | |||| | || |||| |||||||| |||||| Sbjct 229226 TCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACC 229285 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || || |||||| | ||||| |||||| || || Sbjct 229286 ATTAGATGTTCCATTTGTACCACGAATGTAACTTCCAGTTGCACGTATATTATGAACCGA 229345 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || || ||| | |||||||| || Sbjct 229346 AACACCAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATAT 229405 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || ||||||||| |||| | ||||||||||||| Sbjct 229406 ACCCTCAATGCTATCATCCTTCATACATATTAGAAAACAGCTA 229448 Score = 109 bits (120), Expect = 7e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||| || ||||| |||||| ||| ||| | | || Sbjct 229557 AGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAATG 229616 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || | || || ||||| | |||||||| || || || | ||| || Sbjct 229617 GTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATCAA 229676 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644 ||| || ||||||||||| || | ||| | || | ||||| | ||||||| |||| | Sbjct 229677 CATATGTTGAGGTCTTTCGAC-AACTTTTCCTTGCACTTTCAGAAGGTAGGATCTTTCTA 229735 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||||| || || || |||| ||| || || || || || || || Sbjct 229736 AAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATCATAGATGAT 229784 >seq16652 Length=266037 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | ||||| || || |||||||||||| ||| ||| | || || Sbjct 239871 AGTTCCTGAATTGAAGAGAGTAGGTGATGCATGAGTAAACCATCTTTGAGACATTAAATG 239812 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || || ||||| || |||||| || || | || | ||| | Sbjct 239811 ATAAGTTTGGATTGCAGAATCAATATCTTCTTTATGAATCCCAACAGAAACCCTCATCAG 239752 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCA 63644 |||||| ||||| |||||||| | ||| | || | ||| || | || ||| |||| | Sbjct 239751 CATGTGTTGAGGCCTTTCAAC-AACTTTTCCTTGGACTTTTAAGAGATATGATCTTTCAA 239693 Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||| ||||| || | ||| ||| ||||| || || || || Sbjct 239692 GCGTTTTAAATCCAAAGTAATCATATTCAAAATCTCGATCATAGATGAT 239644 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || || || | || | ||| || | ||| | |||| || ||| || | ||| || Sbjct 240193 TCCGCCTTGGTCAACATAACGAGCAGTATCATTGAATACTCGCAGCATCGGTACAATGCC 240134 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| |||||| | |||||||| ||| || ||| Sbjct 240133 ATTAGATGTTCCATTAGTACCACGAATATAACTTCCAGTTGCACGAATGTTATGAACTGA 240074 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || || || || ||| || | || ||| ||| || || ||||| || Sbjct 240073 AACACCAATACCACCAGCTGATTTGCTTATCACAGCACATTCTTTCAATGTTTCATATAT 240014 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||| ||||||||||| |||| Sbjct 240013 CCCCTCGATACTATCATCTTTCAT 239990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633486961635200