Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14499 129 5e-25 seq14413 118 9e-22 seq17130 116 3e-21 seq16023 116 3e-21 >seq14499 Length=662897 Score = 129 bits (142), Expect = 5e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || | || || ||| ||||||| |||| || ||| || Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104 Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| | | | ||||||| | || ||||| ||||| ||||| || || | Sbjct 224103 GACACCATCGA-TAATGTTAAAGCAAAGATCCAA-GACAAGGAAGGAATTCCTCCAGATC 224046 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | |||| || || ||||||||| | ||||||| || || | | |||||||| Sbjct 224045 AGCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACA 223986 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| || || || ||||| || || || ||| ||||||| || Sbjct 223985 ATATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || || |||| || |||| |||||| || Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | |||| || ||||||||||| | ||||||| || || | | |||||||||| Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || || || || ||| |||| || ||| | || || || Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGG 224165 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||||||| |||| ||| | ||||| || || Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || |||| ||| ||| || |||||||| || ||||| ||||| Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || ||||| ||||| | ||||||| || ||| | | ||||| ||| Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 ||||| ||||| || || || ||| | || || | || | || ||||| Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCATCTTGTTCTTCGTCTTCGTGGTGGAAA 223022 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | ||||| ||| ||||||| | ||||| ||| ||| Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| |||||||||||||| ||||| || Sbjct 223875 GACACCATTGACAACGTCA---AGGCTAAGATTCAA-GACAAAGAAGGGATCCCACCAGA 223820 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | || || || || ||||| | || || | ||| || | | || || Sbjct 223819 TCAACAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTA 223760 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || |||||||| || | ||||||| || Sbjct 223759 CAACATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGG 223709 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || ||| |||| || | ||||| || || Sbjct 223707 ATGCAGATTTTCGTCAAAACCCTTACTGGCAAAACCATAACTTTGGAAGTTGAAAGCTCA 223648 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||||||||| || ||||| ||||| Sbjct 223647 GACACCATCGATAATGTAAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAG 223588 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| ||||| | ||||||| || ||| | | ||||||||| Sbjct 223587 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTACAAT 223528 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || Sbjct 223527 ATTCAGAAGGAGTCAACACTTCA 223505 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||||||| |||||||| | ||||| || || Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| || | || ||||||||||| || ||||| ||| Sbjct 223419 GACACCATCGAT--AATGTAAAAGCTAAGATCCAA-GACAAAGAAGGTATCCCACCAGAC 223363 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | || || ||||| ||||| | ||||||| || || | | || ||| Sbjct 223362 CAGCAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTAC 223303 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| ||||| || || || || || Sbjct 223302 AATATACAAAAGGAGTCAACTCTTCA 223277 >seq14413 Length=739167 Score = 118 bits (130), Expect = 9e-22 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| | ||||| ||| ||||||| | || || ||| || Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || | || ||||||||||| || || || ||| Sbjct 402792 GACACCATTGA--CAATGTCAAAGCTAAGATCCAA-GACAAAGAAGGAATCCCTCCAGAC 402736 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | |||| |||||||| ||||| ||||||||| || || | | || ||| Sbjct 402735 CAGCAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTAC 402676 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || ||||| || ||| | ||||| Sbjct 402675 AACATCCAAAAGGAGTCCACACTCCATCTTGTGCT 402641 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | ||||| ||| ||||||| | ||||| ||| || Sbjct 402624 ATGCAGATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTCTAGAAGTTGAGAGCTCA 402565 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || |||| || | ||| ||||| || || ||||| || ||| Sbjct 402564 GACACCATTGA--CAATGTAAAAGCTAAGATTCA-AGACAAGGAGGGTATTCCTCCGGAC 402508 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || ||||| | ||||||| ||||| | | |||||| Sbjct 402507 CAGCAACGTTTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTGCAGATTAC 402448 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 || ||||| || ||||| || || || | |||||| Sbjct 402447 AACATTCAGAAGGAATCAACTCTTCACCTGGTGCTA 402412 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||||||||| || || | || || | ||||| || || Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| ||||| ||||| ||||| || ||||| Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCAG-GACAAGGAAGGCATTCCCCCAGACCA 402278 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| |||||| | ||||| | ||||||| | | |||||||| Sbjct 402277 GCAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAA 402218 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || || || || || || || Sbjct 402217 TATCCAGAAGGAGTCTACTCTTCA 402194 >seq17130 Length=165301 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||| | || || ||| | ||||| | || || || || ||| Sbjct 19893 ATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCATCT 19834 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || || || ||| ||||| ||||| || ||||| |||| Sbjct 19833 GATACAATCGA--CAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGACC 19776 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || ||| | ||||| ||||| |||||| ||||||| | | || | | ||||||| Sbjct 19775 AGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATTACA 19716 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||| || || ||||| || || |||||||| || | ||||||||||| Sbjct 19715 ATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGA 19666 >seq16023 Length=121467 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||||||| |||| || ||||||||||| ||| Sbjct 24613 ATGCAGATTTTTGTTAAGACCTTGACCGGTAAGACCATTACCCTCGAAGTGGAGAGCTCT 24554 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| ||||| || || || ||||| Sbjct 24553 GACACCATAGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 24494 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| | | || ||||| Sbjct 24493 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCCTCGCTGACTACAAC 24434 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| || || || || || Sbjct 24433 ATTCAAAAGGAGTCCACACTCCACTTGGTCCT 24402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433231290940280