Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq14499 129 5e-25
seq14413 118 9e-22
seq17130 116 3e-21
seq16023 116 3e-21
>seq14499
Length=662897
Score = 129 bits (142), Expect = 5e-25
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || ||||| || | || || ||| ||||||| |||| || ||| ||
Sbjct 224163 ATGCAAATCTTCGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCA 224104
Query 25059 GACACTATCGAGTCAC--TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| ||||| | | | ||||||| | || ||||| ||||| ||||| || || |
Sbjct 224103 GACACCATCGA-TAATGTTAAAGCAAAGATCCAA-GACAAGGAAGGAATTCCTCCAGATC 224046
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| | |||| || || ||||||||| | ||||||| || || | | ||||||||
Sbjct 224045 AGCAGAGACTTATCTTCGCAGGCAAACAACTCGAAGATGGCCGTACCTTAGCCGATTACA 223986
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||| ||||| || || || ||||| || || || ||| ||||||| ||
Sbjct 223985 ATATCCAAAAGGAGTCAACTCTACACTTGGTTCTTAGGTTAAGAGGTGG 223937
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | || || || |||| || |||| |||||| ||
Sbjct 224391 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATTACTCTCGAGGTGGAGAGCTCC 224332
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| ||| ||| ||||| ||||| ||||| || |||||
Sbjct 224331 GACACCATCGATAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATTCCTCCAGACCAG 224272
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | |||| || ||||||||||| | ||||||| || || | | ||||||||||
Sbjct 224271 CAGAGACTTATCTTCGCCGGCAAACAGCTCGAAGATGGCCGTACCTTAGCCGATTACAAT 224212
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || || || || ||| |||| || ||| | || || ||
Sbjct 224211 ATTCAAAAGGAGTCAACCCTCCATCTAGTTCTCAGGTTGAGGGGTGG 224165
Score = 118 bits (130), Expect = 9e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||||||||||| |||| ||| | ||||| || ||
Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| ||||| || |||| ||| ||| || |||||||| || ||||| |||||
Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | | || || ||||| ||||| | ||||||| || ||| | | ||||| |||
Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228
||||| ||||| || || || ||| | || || | || | || |||||
Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCATCTTGTTCTTCGTCTTCGTGGTGGAAA 223022
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || ||| | ||||| ||| ||||||| | ||||| ||| |||
Sbjct 223935 ATGCAAATCTTCGTCAAAACTCTCACCGGCAAAACCATCACCCTAGAAGTCGAGAGCTCT 223876
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| | || || | ||| |||||||||||||| ||||| ||
Sbjct 223875 GACACCATTGACAACGTCA---AGGCTAAGATTCAA-GACAAAGAAGGGATCCCACCAGA 223820
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| | | || || || || ||||| | || || | ||| || | | || ||
Sbjct 223819 TCAACAAAGACTCATCTTCGCTGGTAAACAGCTCGAGGACGGTCGTACCCTTGCAGACTA 223760
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||| || ||||| ||||| || || |||||||| || | ||||||| ||
Sbjct 223759 CAACATCCAAAAGGAATCAACCCTTCATTTAGTACTTCGTTTAAGAGGTGG 223709
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || ||| |||| || | ||||| || ||
Sbjct 223707 ATGCAGATTTTCGTCAAAACCCTTACTGGCAAAACCATAACTTTGGAAGTTGAAAGCTCA 223648
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||||||||| || ||||| |||||
Sbjct 223647 GACACCATCGATAATGTAAAGGCTAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAG 223588
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || ||||| ||||| | ||||||| || ||| | | |||||||||
Sbjct 223587 CAGAGGCTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTACAAT 223528
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || || ||
Sbjct 223527 ATTCAGAAGGAGTCAACACTTCA 223505
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | ||||||||| |||||||| | ||||| || ||
Sbjct 223479 ATGCAGATTTTCGTCAAAACCCTAACCGGTAAAACCATCACATTAGAAGTTGAAAGCTCC 223420
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| ||||| | || |||| || | || ||||||||||| || ||||| |||
Sbjct 223419 GACACCATCGAT--AATGTAAAAGCTAAGATCCAA-GACAAAGAAGGTATCCCACCAGAC 223363
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || | | || || ||||| ||||| | ||||||| || || | | || |||
Sbjct 223362 CAGCAAAGACTCATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCTTAGCTGACTAC 223303
Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201
||||| ||||| || || || || ||
Sbjct 223302 AATATACAAAAGGAGTCAACTCTTCA 223277
>seq14413
Length=739167
Score = 118 bits (130), Expect = 9e-22
Identities = 157/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||||||||| | ||||| ||| ||||||| | || || ||| ||
Sbjct 402852 ATGCAAATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTTTAGAGGTTGAGAGTTCC 402793
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || |||| || | || ||||||||||| || || || |||
Sbjct 402792 GACACCATTGA--CAATGTCAAAGCTAAGATCCAA-GACAAAGAAGGAATCCCTCCAGAC 402736
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||| | |||| |||||||| ||||| ||||||||| || || | | || |||
Sbjct 402735 CAGCAGAGACTTATCTTTGCCGGTAAACAGCTAGAAGATGGCCGTACCCTTGCTGACTAC 402676
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || ||||| || ||| | |||||
Sbjct 402675 AACATCCAAAAGGAGTCCACACTCCATCTTGTGCT 402641
Score = 111 bits (122), Expect = 1e-19
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||||||||| | ||||| ||| ||||||| | ||||| ||| ||
Sbjct 402624 ATGCAGATTTTTGTAAAGACCCTTACCGGCAAAACCATCACTCTAGAAGTTGAGAGCTCA 402565
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || |||| || | ||| ||||| || || ||||| || |||
Sbjct 402564 GACACCATTGA--CAATGTAAAAGCTAAGATTCA-AGACAAGGAGGGTATTCCTCCGGAC 402508
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| || || | || ||||| || ||||| | ||||||| ||||| | | ||||||
Sbjct 402507 CAGCAACGTTTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTGCAGATTAC 402448
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|| ||||| || ||||| || || || | ||||||
Sbjct 402447 AACATTCAGAAGGAATCAACTCTTCACCTGGTGCTA 402412
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || |||||||||||||| || || | || || | ||||| || ||
Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| ||||| ||||| || |||||
Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCAG-GACAAGGAAGGCATTCCCCCAGACCA 402278
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || |||||||| |||||| | ||||| | ||||||| | | ||||||||
Sbjct 402277 GCAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAA 402218
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| || || || || || || ||
Sbjct 402217 TATCCAGAAGGAGTCTACTCTTCA 402194
>seq17130
Length=165301
Score = 116 bits (128), Expect = 3e-21
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || ||| | || || ||| | ||||| | || || || || |||
Sbjct 19893 ATGCAGATCTTCGTGAAAACTCTCACGGGGAAAACAATCACCCTTGAGGTTGAATCATCT 19834
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || || || ||| ||||| ||||| || ||||| ||||
Sbjct 19833 GATACAATCGA--CAATGTCAAATCGAAGATCCAAGACAAGGAAGGTATCCCACCGGACC 19776
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || ||| | ||||| ||||| |||||| ||||||| | | || | | |||||||
Sbjct 19775 AGCAACGGTTAATTTTCGCCGGAAAACAACTAGAAGACGGCAGGACATTAGCTGATTACA 19716
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
|||| || || ||||| || || |||||||| || | |||||||||||
Sbjct 19715 ATATCCAGAAGGAATCAACTCTTCATTTAGTTCTCCGTTTAAGAGGAGGA 19666
>seq16023
Length=121467
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||||||||| |||| || ||||||||||| |||
Sbjct 24613 ATGCAGATTTTTGTTAAGACCTTGACCGGTAAGACCATTACCCTCGAAGTGGAGAGCTCT 24554
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||| ||||| || || || |||||
Sbjct 24553 GACACCATAGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCAG 24494
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || || || | || |||| |||||| | | || |||||
Sbjct 24493 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACCCTCGCTGACTACAAC 24434
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || ||||| || || || || ||
Sbjct 24433 ATTCAAAAGGAGTCCACACTCCACTTGGTCCT 24402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433231290940280
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