Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq14462 223 4e-53 seq17375 91.5 2e-13 seq14737 91.5 2e-13 seq16816 89.7 6e-13 seq16649 87.8 2e-12 seq15336 87.8 2e-12 seq15023 87.8 2e-12 seq18090 84.2 2e-11 seq16938 84.2 2e-11 seq13136 84.2 2e-11 seq15422 82.4 8e-11 seq12798 82.4 8e-11 >seq14462 Length=746139 Score = 223 bits (246), Expect = 4e-53 Identities = 416/601 (69%), Gaps = 10/601 (2%) Strand=Plus/Minus Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 |||||| | | || || || ||| ||| | |||||||||||||| || ||||| || Sbjct 137951 ATTGTAGAGCAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTT 137892 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAAC 93197 | ||| || | || || | || |||||||| || ||||| || || || ||| |||| Sbjct 137891 GGAGAAGGTGAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAAC 137833 Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTT 93256 |||| || || || |||||||| ||| || || || || ||||| || ||||| ||| Sbjct 137832 TACCGGAGAAGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTT 137773 Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | | || | | |||||| | | ||||| | ||||| || || ||| || | | Sbjct 137772 GAG--AT--CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATT 137717 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 |||||||| ||| ||| || | |||| || | || ||||| ||||| | Sbjct 137716 GTTTCGATTGCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGA 137657 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| |||||| || ||||| | |||||| || || ||||| |||||||||||| Sbjct 137656 AGTAGACTATACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCA 137597 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTAT 93495 | || |||| | ||| || || || | |||| | | ||||| || ||| || Sbjct 137596 CGCGCCTCCGATACCTGAACATCG-GACATGAATCGAGATGCAAGATTCTCCAAGACGAT 137538 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| || || || || || || || | |||||| || || ||| || | || || Sbjct 137537 GCCATCAGAGGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTT 137478 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || ||||||||| | || | ||| ||||||||||| ||| ||||||||||||| Sbjct 137477 TAAATTCTCCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGA 137418 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || || || || |||||||| ||||| || | | | |||||||| || || || ||||| Sbjct 137417 CGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACAT-ACAAA 137359 Query 93676 A 93676 | Sbjct 137358 A 137358 >seq17375 Length=88637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 60104 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 60045 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| |||||| || ||| Sbjct 60044 GTGGGTTCAAATCCCACTTCTGACATATAATT 60013 >seq14737 Length=326791 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 221658 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 221717 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| |||||| ||||| Sbjct 221718 GTGGGTTCAAATCCCACTTCTGACATTTTATT 221749 >seq16816 Length=46279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/109 (80%), Gaps = 11/109 (10%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 12215 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 12272 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA--AATTATTATTG---GAATTT 126364 |||||||||| || ||||| |||||| ||| |||||| |||||| Sbjct 12273 GCGTGGGTTCAAATCCCACTTCTGACATGTATTTTTATTGTCAGAATTT 12321 >seq16649 Length=249853 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 7/97 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 32245 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 32302 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| | || ||||| Sbjct 32303 GCGTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATT 32338 >seq15336 Length=260210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/104 (80%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 188799 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 188742 Query 126325 GGGTTCGAACCCCACACCTGACAA--ATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| ||| ||| ||||| |||||| Sbjct 188741 GGGTTCAAATCCCACAGCTGTCAATTATTTTTATTTTTATTTTT 188698 >seq15023 Length=735153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 37068 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 37011 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 37010 TTCAAATCCCACAGCTGTCAAATTTTT 36984 >seq18090 Length=225164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 85594 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 85651 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 85652 GGGTTCAAATCCCACAGCTGTCATATTTTT 85681 >seq16938 Length=276168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 141378 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 141437 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||| || ||||| ||||||||| Sbjct 141438 GTGGGTTCAAATCCCACTTCTGACAAAT 141465 >seq13136 Length=511056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 ||||| | ||| |||||||||||||||||||||||||||||| | |||||| || Sbjct 458082 ATTTAATGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAA 458139 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 | |||||||||| || |||||| ||| | ||||| | || |||| Sbjct 458140 GGGCGTGGGTTCAAATCCCACAGCTGTC-AATTAATGTTTTAATT 458183 >seq15422 Length=799803 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 393355 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 393414 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| ||||| | || ||||| |||||| Sbjct 393415 GTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATTTTTATTTTT 393457 >seq12798 Length=594025 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 8/94 (9%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 71568 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 71511 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| ||||| |||||| Sbjct 71510 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 71479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556733334562880