Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 223 4e-53
seq17375 91.5 2e-13
seq14737 91.5 2e-13
seq16816 89.7 6e-13
seq16649 87.8 2e-12
seq15336 87.8 2e-12
seq15023 87.8 2e-12
seq18090 84.2 2e-11
seq16938 84.2 2e-11
seq13136 84.2 2e-11
seq15422 82.4 8e-11
seq12798 82.4 8e-11
>seq14462
Length=746139
Score = 223 bits (246), Expect = 4e-53
Identities = 416/601 (69%), Gaps = 10/601 (2%)
Strand=Plus/Minus
Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138
|||||| | | || || || ||| ||| | |||||||||||||| || ||||| ||
Sbjct 137951 ATTGTAGAGCAGACAAGCGAAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTT 137892
Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAAC 93197
| ||| || | || || | || |||||||| || ||||| || || || ||| ||||
Sbjct 137891 GGAGAAGGTGAGTCCAGGCATGAGACCTCGTTTTTTAAGCCAGAAAATGGA-GCAGAAAC 137833
Query 93198 TACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA-TTT 93256
|||| || || || |||||||| ||| || || || || ||||| || ||||| |||
Sbjct 137832 TACCGGAGAAGAAGATACCTTCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTT 137773
Query 93257 GCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316
| | || | | |||||| | | ||||| | ||||| || || ||| || | |
Sbjct 137772 GAG--AT--CCGTCGATCCAAGTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATT 137717
Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376
|||||||| ||| ||| || | |||| || | || ||||| ||||| |
Sbjct 137716 GTTTCGATTGCGCGAAAGAGATGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGA 137657
Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436
| ||| |||||| || ||||| | |||||| || || ||||| ||||||||||||
Sbjct 137656 AGTAGACTATACATCTCCGAATGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCA 137597
Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAA-AATCTCTCTACGAGATTTTCATTGACTAT 93495
| || |||| | ||| || || || | |||| | | ||||| || ||| ||
Sbjct 137596 CGCGCCTCCGATACCTGAACATCG-GACATGAATCGAGATGCAAGATTCTCCAAGACGAT 137538
Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555
||||| || || || || || || || | |||||| || || ||| || | || ||
Sbjct 137537 GCCATCAGAGGCGGCGAAGAAGGCTAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTT 137478
Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615
| || ||||||||| | || | ||| ||||||||||| ||| |||||||||||||
Sbjct 137477 TAAATTCTCCCAATCGCGTCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGA 137418
Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675
|| || || || |||||||| ||||| || | | | |||||||| || || || |||||
Sbjct 137417 CGCCTCGGCCTTCTTGTACATCTCCCAGATCTGTGGGTATTGAATCGGGAACAT-ACAAA 137359
Query 93676 A 93676
|
Sbjct 137358 A 137358
>seq17375
Length=88637
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 60104 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 60045
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||| || |||
Sbjct 60044 GTGGGTTCAAATCCCACTTCTGACATATAATT 60013
>seq14737
Length=326791
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/92 (83%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||
Sbjct 221658 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 221717
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||| || ||||| |||||| |||||
Sbjct 221718 GTGGGTTCAAATCCCACTTCTGACATTTTATT 221749
>seq16816
Length=46279
Score = 89.7 bits (98), Expect = 6e-13
Identities = 87/109 (80%), Gaps = 11/109 (10%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 12215 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 12272
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA--AATTATTATTG---GAATTT 126364
|||||||||| || ||||| |||||| ||| |||||| ||||||
Sbjct 12273 GCGTGGGTTCAAATCCCACTTCTGACATGTATTTTTATTGTCAGAATTT 12321
>seq16649
Length=249853
Score = 87.8 bits (96), Expect = 2e-12
Identities = 79/97 (81%), Gaps = 7/97 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 32245 AGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 32302
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||| || ||||| ||||| | || |||||
Sbjct 32303 GCGTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATT 32338
>seq15336
Length=260210
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/104 (80%), Gaps = 4/104 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 188799 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 188742
Query 126325 GGGTTCGAACCCCACACCTGACAA--ATTATTATTGGAATTTTT 126366
|||||| || |||||| ||| ||| ||| ||||| ||||||
Sbjct 188741 GGGTTCAAATCCCACAGCTGTCAATTATTTTTATTTTTATTTTT 188698
>seq15023
Length=735153
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 37068 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 37011
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| |||||| ||
Sbjct 37010 TTCAAATCCCACAGCTGTCAAATTTTT 36984
>seq18090
Length=225164
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 85594 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 85651
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||| || |||||| ||| || ||| ||
Sbjct 85652 GGGTTCAAATCCCACAGCTGTCATATTTTT 85681
>seq16938
Length=276168
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/88 (82%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 141378 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 141437
Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350
|||||||| || ||||| |||||||||
Sbjct 141438 GTGGGTTCAAATCCCACTTCTGACAAAT 141465
>seq13136
Length=511056
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/105 (79%), Gaps = 3/105 (3%)
Strand=Plus/Plus
Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318
||||| | ||| |||||||||||||||||||||||||||||| | |||||| ||
Sbjct 458082 ATTTAATGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAA 458139
Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363
| |||||||||| || |||||| ||| | ||||| | || ||||
Sbjct 458140 GGGCGTGGGTTCAAATCCCACAGCTGTC-AATTAATGTTTTAATT 458183
>seq15422
Length=799803
Score = 82.4 bits (90), Expect = 8e-11
Identities = 82/104 (79%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 393355 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 393414
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
|||||||| || ||||| ||||| | || ||||| ||||||
Sbjct 393415 GTGGGTTCAAATCCCACTTCTGAC-ATTTTTTATTTTTATTTTT 393457
>seq12798
Length=594025
Score = 82.4 bits (90), Expect = 8e-11
Identities = 76/94 (81%), Gaps = 8/94 (9%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 71568 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 71511
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||||| || ||||| ||||| ||||||
Sbjct 71510 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATT 71479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556733334562880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |