Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq16938 104 2e-17 seq14413 96.9 2e-15 seq14499 87.8 1e-12 >seq16938 Length=276168 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| |||| | ||||||||||| |||||||| || || ||||||||| Sbjct 257162 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCCGGTAAGCAACTAGAA 257103 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT- 22045 ||| | ||| | ||||||||||| || ||||| ||||||||||||||| | || || Sbjct 257102 GATGGCAGAACACTTGCCGATTACAACATCCAGAAAGAATCTACTCTTCATCTAGTCTTG 257043 Query 22046 ACGTTTACGAGGAGGA 22061 | | ||| |||| ||| Sbjct 257042 AGGCTTA-GAGGTGGA 257028 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| |||| | ||||||||||| |||||||| || || ||||||||| Sbjct 249658 GACAAAGAGGGTATACCACCTGATCAACAGAGACTCATCTTTGCGGGTAAGCAACTAGAA 249717 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATT- 22045 ||| || ||| | || |||||||| || ||||| || |||||||||||| | || || Sbjct 249718 GATGGAAGAACACTTGCGGATTACAACATCCAGAAAGAGTCTACTCTTCATCTAGTCTTG 249777 Query 22046 ACGTTTACGAGGAGGA 22061 | | ||| |||| ||| Sbjct 249778 AGGCTTA-GAGGTGGA 249792 >seq14413 Length=739167 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || ||||| || |||||| ||||| ||| | || Sbjct 402396 ATGCAGATCTTCGTAAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTCA 402337 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| || ||| || || || || | || | |||| Sbjct 402336 GACACCATTGACAACGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 402277 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| || |||||||| ||||| ||| | || ||||||||| Sbjct 402276 CAGAGACTCATCTTTGCCGGGAAACAACTTGAAGACGGTCGCACTCTTGCGGATTACAAT 402217 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || |||||||| ||||||||||| Sbjct 402216 ATCCAGAAGGAGTCTACTCTTCA 402194 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || |||||||| ||| | ||| || | || Sbjct 403080 ATGCAAATCTTTGTGAAAACTCTCACTGGTAAAACCATCACCCTAGAAGTTGAGAGCTCA 403021 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || ||| |||||||||||| | ||| |||| Sbjct 403020 GACACCATTGACAATGTCAAAGCTAAGATTCAAGATAAAGAGGGTATCCCTCCGGACCAG 402961 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| || || ||||| || || ||| ||| | || || ||||| Sbjct 402960 CAGAGACTTATCTTCGCCGGTAAACAGCTCGAGGATGGTCGTACTCTAGCTGACTACAAC 402901 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || || || |||| | ||||| |||| || Sbjct 402900 ATCCAGAAGGAATCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 402854 >seq14499 Length=662897 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| ||||| || || ||||||||||| | ||| ||| | | Sbjct 223251 ATGCAGATTTTTGTTAAGACATTGACCGGTAAAACCATTACATTAGAAGTTGAAAGCTCG 223192 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| || |||||||| ||| | || |||| Sbjct 223191 GATACTATTGATAATGTGAAAGCAAAGATCCAAGATAAAGAAGGTATCCCACCGGACCAG 223132 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || || ||||| || |||||| ||| | || ||||| ||| Sbjct 223131 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACTCTTGCTGATTATAAT 223072 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| || || ||||||||| | || | ||| | || || ||| Sbjct 223071 ATTCAGAAAGAGTCGACTCTTCATCTTGTTCTTCGTCTTCGTGGTGGA 223024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358044874602448