Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq14462 168 1e-36 >seq14462 Length=746139 Score = 168 bits (186), Expect = 1e-36 Identities = 576/879 (66%), Gaps = 33/879 (4%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| || || || || | || ||||| ||||| |||||||| | ||| | |||||| Sbjct 137367 TTCCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGG 137426 Query 242935 ACCACCGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGCGAGAAACTCAATGA 242993 || |||||||||| ||| | | ||| ||| ||| ||| ||||| | || || Sbjct 137427 ACTGCCGAGGAAGTCGATCT-ATCACAGGACGGACGCGATTGG---GAGAATTTAAACGA 137482 Query 242994 CGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGT 243053 || |||||| || |||||||| || | ||| || ||||| | ||| ||||| || || Sbjct 137483 CGGCGAACGACACTTCATCAAGCATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGT 137542 Query 243054 GATGGAAAATCT-GCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAA 243111 |||| ||||| ||| | | || ||| || || ||| | ||||| || Sbjct 137543 CTTGGAGAATCTTGCATCTCGA--TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGCT 137600 Query 243112 TTTTATGCTTACCAAAC----ATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 || || | | |||| ||| | |||| || ||||| || ||| ||| || Sbjct 137601 TTCTACGGATTTCAAATCGCGATTGA--GAAT--ATTCATTCGGAGATGTATAGTCTACT 137656 Query 243168 TATCGACGCGCTTATTTCAGATGAACAA-GAGCGAAACGAGCT-TTTCGACGCCATCGAA 243225 | | || | || | || ||||| || || || | || ||||| ||| |||||| Sbjct 137657 TCTTGATAC-CTACATCAAGGACAACAAAGAAAGAGACCATCTCTTTCG-CGCAATCGAA 137714 Query 243226 AACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGG---T 243282 | || ||| ||| || || || ||||||| || ||| | || ||| | Sbjct 137715 ACAATCCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGA---CGGATCT 137771 Query 243283 AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGG 243342 || | ||||| |||||| |||| |||| | |||||||||||||| | || ||||| Sbjct 137772 CAAACCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTCTTCTCCGGT 137831 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 ||||||||| |||| || ||||| || |||| | |||||||| ||| | || Sbjct 137832 AGTTTCTGCTCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTCACCTTCTCC 137891 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||||| ||| || ||||| ||||| || | |||| | || | || Sbjct 137892 AACGAGTTAATCTCACGAGACGAAGGCCTCCATTGCGATTTCGCTTGTCTGCTCTA---C 137948 Query 243463 AAGCTCC--AGAA-CAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 || |||| |||| ||| || || || || || |||| | || ||||| Sbjct 137949 AATCTCCTGAGAACCAAATTAACAGAGGAGCGCGTGAAGTCAATCGTATGCGACGCAGTG 138008 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 || | ||| | ||| || | |||||||| |||| ||| | | |||| ||||| | Sbjct 138009 GAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAATCGT 138068 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || ||| | || ||||||||||||||||| || || | || ||| | || || Sbjct 138069 GACCTAATGAGTCAATACATCGAATTCGTAGCGGATCGGTTGTTGGGTGCGTTAGGGTAC 138128 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | || ||||| || || |||| | |||||||| |||||||| || || Sbjct 138129 GGTAAGGTGTATGGTGTGTCTAATCCGTTTGATTGGATGGAGCTTATTTCGCTGCAGGGT 138188 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||||| ||||||||||| ||| | || | ||||| ||| Sbjct 138189 AAAACAAACTTCTTCGAGAAGAGAGTTGGAGATTACCAA 138227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102621239537200