Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq14462 143 3e-29 seq15261 82.4 9e-11 >seq14462 Length=746139 Score = 143 bits (158), Expect = 3e-29 Identities = 391/588 (66%), Gaps = 17/588 (3%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 ||||| || ||||| || ||||| | || || |||||| ||||| ||||||||||| Sbjct 137923 TGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCT 137864 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 || || || | ||||||||| | || || ||| ||||||||||| || || || || Sbjct 137863 CGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAG 137804 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 ||||| || | || |||||| ||||||| | || | ||| | ||| |||||||| Sbjct 137803 GCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCC 137747 Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTT 126297 || ||||| || || | | |||||||| || | ||| || |||||| | | |||| Sbjct 137746 CATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGATGGTCTCTT 137687 Query 126298 T-TCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCG--TGGAC 126354 | | || || || |||||||| |||| | || | || ||| || ||| || | Sbjct 137686 TCTTTGTTG--TCCTTGATGTAGGTATCAAGAAG--TAGACTATACATCTCCGAATGAAT 137631 Query 126355 CATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 | ||| | | ||| | ||||||||| ||||| || || ||| | |||| Sbjct 137630 ATTCTCAATCGCGATTTGAAATCCGTAGAAAGCACGCGCCTCCGATACCTGAA---CATC 137574 Query 126415 GG-CA-AAATTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 126471 || || ||| | || | |||||| || || || ||||| || | || || || || Sbjct 137573 GGACATGAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGAAGAAGGC 137514 Query 126472 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 126531 | || || ||| ||||| | |||| ||||| | ||| ||| ||| || Sbjct 137513 TAAGACATGCTTGATGAAGTGTCGTTCGCCGTCGTTTAAATTCTCCCAATCGCGTCCGTC 137454 Query 126532 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 126591 || || ||||| || ||||| ||||||||| | | |||||||| || | || Sbjct 137453 CTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTTGTACATCTC 137394 Query 126592 CCAAAGGTGGGGATACTTCAGGGGGAACACTGTAAATCTGTTTAGGGT 126639 ||| | || || || | | ||||||| |||||||| | |||| Sbjct 137393 CCAGATCTGTGGGTATTGAATCGGGAACATACAAAATCTGTCTGGGGT 137346 >seq15261 Length=284138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 |||||||||||| |||||||||| ||||| || || || || ||||||||||||||| Sbjct 55051 AATTACCGAGAAGCCTATGGTCTGTTTGCCTGTAATGGAATACTGTTCAACCACGAGTCA 55110 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 8746 || || || ||| | | |||||||| | ||| || || Sbjct 55111 CCACGCCGGGGCGAGAACTTCGTGACCAGGAAAATAAC 55148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597216865760960