Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq16577 114 9e-21
seq12257 111 1e-19
seq14499 105 5e-18
seq17130 100 2e-16
seq14413 89.7 4e-13
seq16023 87.8 1e-12
>seq16577
Length=433012
Score = 114 bits (126), Expect = 9e-21
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | |||||| || || || || || |||||||||||| ||| | | |||||||
Sbjct 33644 AACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGACCGTCTTC 33703
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| |||||| |||||| | |||||||| || || || |||||||||||| || ||
Sbjct 33704 GAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCCTG 33763
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| ||| ||| ||| | || || ||||| ||| || || | || || |||||
Sbjct 33764 AATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTATCGTTTT 33823
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182
||| || || ||||| || || || ||||| |||||
Sbjct 33824 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGA 33859
>seq12257
Length=1143886
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| |||| ||| | | ||| || ||||| || || || || || ||||||||||| |
Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| |||| |||| || ||||| || || ||| | ||||| || || || || |||
Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| || ||| ||| ||| | || || ||||| ||| ||
Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACC 1016372
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180
|||| ||| || || || || || || ||||| || ||||| ||||| |||
Sbjct 1016373 TCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCTTT 1016423
>seq14499
Length=662897
Score = 105 bits (116), Expect = 5e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | |||||| || || ||||| || || || ||||| ||| | | | |||||
Sbjct 223042 AACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTC 223101
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| || ||| | ||||| | ||| ||||| ||| || ||||| || ||
Sbjct 223102 AAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTG 223161
Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|| |||||||| ||| | || |||||||| |||| || ||||| ||||||||||
Sbjct 223162 GATCTTTGCTTTC-ACATTATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTT 223220
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| |||| || || |||||||| ||||||
Sbjct 223221 TACCGGTCAATGTCTTAACAAAAATCTGCATA 223252
Score = 102 bits (112), Expect = 6e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008
||||| | ||| || | ||||| ||| ||||| || || ||||| || ||||||||| ||
Sbjct 224165 CCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 224224
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| | |||||||| ||| | || | | ||| ||||| ||
Sbjct 224225 AAGG-TACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||||||||||| || ||||| || ||| | || || || ||| | || |
Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGC-CTTGACATTATCGATGGTGTCGGAGCTCTCCA 224342
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | |||||||| || || || |||||||| || || ||||||||
Sbjct 224343 CCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391
Score = 95.1 bits (104), Expect = 9e-15
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008
||||||| || || | ||| || || || || || || ||||| || ||||||||| ||
Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| | ||||||||| ||| | || | | ||| || || ||
Sbjct 223997 AAGG-TACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGG 224055
Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||||||||||| || ||||| ||| ||| | || || || || | || |
Sbjct 224056 AATTCCTTCCTTGTCTTGGATCTTTGC-TTTAACATTATCGATGGTGTCTGAGCTCTCAA 224114
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | || |||||||| || || || |||||||| || |||||||||
Sbjct 224115 CCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATA 224164
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032
||||| || || || |||||||| ||||| || ||| || | | | ||||| | ||
Sbjct 223277 TGAAGAGTTGACTCCTTTTGTATATTGTAGTCAGCTAAGG-TACGGCCATCTTCAAGCTG 223335
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || ||| | || | | || ||||| ||| || ||||| ||||| || ||
Sbjct 223336 TTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 223395
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||||||| | || || || ||| |||| || ||||| || ||||||||||| ||
Sbjct 223396 AGCTTTTACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTTTTACCGGT 223455
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| || ||||| ||||||
Sbjct 223456 TAGGGTTTTGACGAAAATCTGCATA 223480
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| || | | |||||||||||||| || || ||||| |||||||| ||
Sbjct 223709 CCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCA 223768
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | |||| || | ||||| |||||| | || | | ||||| || |||
Sbjct 223769 AGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGG 223828
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| ||| || || || | || || || || | || ||
Sbjct 223829 ATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 223888
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| ||| |||||||| || || |||||||| || || |||||||||
Sbjct 223889 TCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936
>seq17130
Length=165301
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025
|||||||||||| || || || || || || |||||||| ||| | | || ||||||
Sbjct 19684 AACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT-AATGTCCTGCCGTCTT 19742
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
||| |||||| || ||| | || || || || ||||| ||| || |||||||||||
Sbjct 19743 CTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTT 19802
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
|| || ||| ||| | || || ||||| ||| || || | ||| || ||||
Sbjct 19803 GGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTT 19862
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| || || |||||||| || || || ||||| ||
Sbjct 19863 TCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896
>seq14413
Length=739167
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| || || || || || ||||||||||| || | | | ||||| | |||
Sbjct 402422 TGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGT 402481
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | |||||||| || ||||| ||||| || |||||||| ||| ||
Sbjct 402482 TTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTA 402541
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||||||| | || || || || | || || |||| || |||||||| || ||
Sbjct 402542 GCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTA 402601
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||||||||| ||||||
Sbjct 402602 AGGGTCTTTACAAAAATCTGCATA 402625
Score = 86.0 bits (94), Expect = 4e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| || || || || ||||| |||||||| || || | | | ||||||| ||
Sbjct 402649 ATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCTTCTAGCTG 402708
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||| || || | || | | ||| ||||| || |||||||| ||||| || ||
Sbjct 402709 TTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTT 402768
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
||| ||| | || || || ||| | | || || ||||| || |||||||| || ||
Sbjct 402769 AGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTTTTGCCGGT 402828
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||||||||||||||||
Sbjct 402829 AAGGGTCTTTACAAAAATTTGCATA 402853
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
||||| ||||| || || || || |||||||| ||| | | ||||||| | ||||
Sbjct 402194 TGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGT 402253
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | || | | ||| ||||| ||||| ||||||||||| ||| ||
Sbjct 402254 TTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 402313
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || || || |||| || || |||||||| || || ||||||
Sbjct 402314 GCCTTAACGTTGTCAATGGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTC 402373
Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177
| ||| ||||| || || ||||||
Sbjct 402374 AAAGTCTTTACGAAGATCTGCATA 402397
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008
||||||| ||| | | || || || ||||| || || || || |||||||| || |||
Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
||| | | | || || | ||||| || ||| | || | | ||| ||||| ||
Sbjct 402914 -AGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGG 402972
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|| || || || || ||| || ||| ||| | || || || || | || ||
Sbjct 402973 GATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 403032
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|||| ||| ||||||||||| || |||||||| ||||| |||||||||
Sbjct 403033 TTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081
>seq16023
Length=121467
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023
|| || || |||||||| || || || || ||||||||||| ||| ||| | | | ||
Sbjct 25086 AAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGACCATC 25144
Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083
|| | || || || || | ||||| | ||| ||||| || ||||| ||||||||
Sbjct 25145 CTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTC 25204
Query 15084 ACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142
|| ||||| ||| || | || || |||||| |||| || || ||||| ||||
Sbjct 25205 TTGGATCTTTGC-TTTAACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGG 25263
Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || |||| ||||| || || ||||||||
Sbjct 25264 TCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357312238146920
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