Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq16577 114 9e-21 seq12257 111 1e-19 seq14499 105 5e-18 seq17130 100 2e-16 seq14413 89.7 4e-13 seq16023 87.8 1e-12 >seq16577 Length=433012 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || || || |||||||||||| ||| | | ||||||| Sbjct 33644 AACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAATCGGCAAGAGTACGACCGTCTTC 33703 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| |||||| | |||||||| || || || |||||||||||| || || Sbjct 33704 GAGTTGTTTTCCAGCGAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCCTG 33763 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| ||| ||| | || || ||||| ||| || || | || || ||||| Sbjct 33764 AATCTTGGCTTTGACATTGTCGATTGTATCTGATGATTCGACTTCAAGAGTTATCGTTTT 33823 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 ||| || || ||||| || || || ||||| ||||| Sbjct 33824 ACCCGTTAGGGTTTTCACGAAGATCTGCATCTTTGA 33859 >seq12257 Length=1143886 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| || ||||| || || || || || ||||||||||| | Sbjct 1016193 CCTCCTCTCAAACGGAGAACCAAGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCCGCG 1016252 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||| || ||||| || || ||| | ||||| || || || || ||| Sbjct 1016253 AGAGTTCTACCGTCCTCCAATTGCTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 1016312 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| ||| ||| | || || ||||| ||| || Sbjct 1016313 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTATCGATCGTATCAGAGGATTCAACC 1016372 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| ||| || || || || || || ||||| || ||||| ||||| ||| Sbjct 1016373 TCTAGGGTGATTGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATCTTT 1016423 >seq14499 Length=662897 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || ||||| || || || ||||| ||| | | | ||||| Sbjct 223042 AACAAGATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCAAGAGTCCGGCCATCTTC 223101 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || ||| | ||||| | ||| ||||| ||| || ||||| || || Sbjct 223102 AAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCTTCTTTATCTTG 223161 Query 15087 AAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || |||||||| ||| | || |||||||| |||| || ||||| |||||||||| Sbjct 223162 GATCTTTGCTTTC-ACATTATCAATAGTATCCGAGCTTTCAACTTCTAATGTAATGGTTT 223220 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| |||| || || |||||||| |||||| Sbjct 223221 TACCGGTCAATGTCTTAACAAAAATCTGCATA 223252 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008 ||||| | ||| || | ||||| ||| ||||| || || ||||| || ||||||||| || Sbjct 224165 CCACCCCTCAACCTGAGAACTAGATGGAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 224224 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | |||||||| ||| | || | | ||| ||||| || Sbjct 224225 AAGG-TACGGCCATCTTCGAGCTGTTTGCCGGCGAAGATAAGTCTCTGCTGGTCTGGAGG 224283 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||||| || ||||| || ||| | || || || ||| | || | Sbjct 224284 AATTCCTTCCTTGTCTTGGATCTTTGC-CTTGACATTATCGATGGTGTCGGAGCTCTCCA 224342 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||||| || || || |||||||| || || |||||||| Sbjct 224343 CCTCGAGAGTAATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCAT 224391 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG-CT 15008 ||||||| || || | ||| || || || || || || ||||| || ||||||||| || Sbjct 223937 CCACCTCTTAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCT 223996 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||||||||| ||| | || | | ||| || || || Sbjct 223997 AAGG-TACGGCCATCTTCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGG 224055 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||||| || ||||| ||| ||| | || || || || | || | Sbjct 224056 AATTCCTTCCTTGTCTTGGATCTTTGC-TTTAACATTATCGATGGTGTCTGAGCTCTCAA 224114 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || |||||||| || || || |||||||| || ||||||||| Sbjct 224115 CCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACGAAGATTTGCATA 224164 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| || || || |||||||| ||||| || ||| || | | | ||||| | || Sbjct 223277 TGAAGAGTTGACTCCTTTTGTATATTGTAGTCAGCTAAGG-TACGGCCATCTTCAAGCTG 223335 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || | | || ||||| ||| || ||||| ||||| || || Sbjct 223336 TTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATACCTTCTTTGTCTTGGATCTT 223395 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||||||| | || || || ||| |||| || ||||| || ||||||||||| || Sbjct 223396 AGCTTTTACATTATCGATGGTGTCGGAGCTTTCAACTTCTAATGTGATGGTTTTACCGGT 223455 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || ||||| |||||| Sbjct 223456 TAGGGTTTTGACGAAAATCTGCATA 223480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | |||||||||||||| || || ||||| |||||||| || Sbjct 223709 CCACCTCTTAAACGAAGTACTAAATGAAGGGTTGATTCCTTTTGGATGTTGTAGTCTGCA 223768 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | ||||| |||||| | || | | ||||| || ||| Sbjct 223769 AGGGTACGACCGTCCTCGAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGATCTGGTGGG 223828 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || || || | || || || || | || || Sbjct 223829 ATCCCTTCTTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACT 223888 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| |||||||| || || |||||||| || || ||||||||| Sbjct 223889 TCTAGGGTGATGGTTTTGCCGGTGAGAGTTTTGACGAAGATTTGCATA 223936 >seq17130 Length=165301 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTT 15025 |||||||||||| || || || || || || |||||||| ||| | | || |||||| Sbjct 19684 AACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT-AATGTCCTGCCGTCTT 19742 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||| |||||| || ||| | || || || || ||||| ||| || ||||||||||| Sbjct 19743 CTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGGATACCTTCCTTGTCTT 19802 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 || || ||| ||| | || || ||||| ||| || || | ||| || |||| Sbjct 19803 GGATCTTCGATTTGACATTGTCGATTGTATCAGATGATTCAACCTCAAGGGTGATTGTTT 19862 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || || |||||||| || || || ||||| || Sbjct 19863 TCCCCGTGAGAGTTTTCACGAAGATCTGCATCTT 19896 >seq14413 Length=739167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| || | | | ||||| | ||| Sbjct 402422 TGAAGAGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCTTCGAGCTGT 402481 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | |||||||| || ||||| ||||| || |||||||| ||| || Sbjct 402482 TTTCCTGCAAAGATCAAACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTA 402541 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||||| | || || || || | || || |||| || |||||||| || || Sbjct 402542 GCTTTTACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGAGTGATGGTTTTGCCGGTA 402601 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| |||||| Sbjct 402602 AGGGTCTTTACAAAAATCTGCATA 402625 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || || || || ||||| |||||||| || || | | | ||||||| || Sbjct 402649 ATGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTACGGCCATCTTCTAGCTG 402708 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || || | || | | ||| ||||| || |||||||| ||||| || || Sbjct 402709 TTTACCGGCAAAGATAAGTCTCTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTT 402768 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || ||| | | || || ||||| || |||||||| || || Sbjct 402769 AGCTTTGACATTGTCAATGGTGTCGGAACTCTCAACCTCTAAAGTGATGGTTTTGCCGGT 402828 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||||||||||||| Sbjct 402829 AAGGGTCTTTACAAAAATTTGCATA 402853 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || || |||||||| ||| | | ||||||| | |||| Sbjct 402194 TGAAGAGTAGACTCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGT 402253 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | | ||| ||||| ||||| ||||||||||| ||| || Sbjct 402254 TTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 402313 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || |||| || || |||||||| || || |||||| Sbjct 402314 GCCTTAACGTTGTCAATGGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTC 402373 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 | ||| ||||| || || |||||| Sbjct 402374 AAAGTCTTTACGAAGATCTGCATA 402397 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||||| ||| | | || || || ||||| || || || || |||||||| || ||| Sbjct 402854 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCT 402913 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | || || | ||||| || ||| | || | | ||| ||||| || Sbjct 402914 -AGAGTACGACCATCCTCGAGCTGTTTACCGGCGAAGATAAGTCTCTGCTGGTCCGGAGG 402972 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || || || || || ||| || ||| ||| | || || || || | || || Sbjct 402973 GATACCCTCTTTATCTTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAAC 403032 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| ||||||||||| || |||||||| ||||| ||||||||| Sbjct 403033 TTCTAGGGTGATGGTTTTACCAGTGAGAGTTTTCACAAAGATTTGCATA 403081 >seq16023 Length=121467 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || |||||||| || || || || ||||||||||| ||| ||| | | | || Sbjct 25086 AAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGACCATC 25144 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | || || || || | ||||| | ||| ||||| || ||||| |||||||| Sbjct 25145 CTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTC 25204 Query 15084 ACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 || ||||| ||| || | || || |||||| |||| || || ||||| |||| Sbjct 25205 TTGGATCTTTGC-TTTAACGTTGTCGATGGTATCGGAGCTTTCCACCTCCAAGGTGATGG 25263 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || |||| ||||| || || |||||||| Sbjct 25264 TCTTGCCCGTCAAGGTTTTAACGAAGATTTGCAT 25297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357312238146920