Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq11797 655 0.0 seq17927 551 7e-152 seq14836 116 5e-21 seq17628 98.7 1e-15 seq12403 84.2 3e-11 >seq11797 Length=28381 Score = 655 bits (726), Expect = 0.0 Identities = 741/993 (75%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587 |||| || |||| ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 408 CTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 467 Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647 ||||| ||||||||| | | || ||||| || || | ||||| ||||||| ||| Sbjct 468 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 527 Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707 || | || |||||||| ||||| || || | ||| |||||||| || |||| ||| | Sbjct 528 AACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAA 587 Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767 |||||| ||||| || || || || ||||| || || | |||||| || | ||||| || Sbjct 588 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 647 Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827 |||||||| ||| ||||||||||||| || ||||| || || |||||||| || || Sbjct 648 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 707 Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887 |||||| || ||||||||||||||||| | ||||| | || || ||| || || Sbjct 708 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 767 Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947 |||||| | | || | ||| ||||| | ||||||||||| ||||| || || || || Sbjct 768 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 827 Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007 || || |||||||| || || | |||||| || |||||||| || ||||| ||||| || Sbjct 828 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGC 887 Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067 ||||| |||| |||| ||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 888 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 947 Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127 |||||||| | |||||||| | ||| || |||| || || ||||| ||||| || Sbjct 948 GCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGA 1007 Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187 ||||| ||| ||||| ||||||||||| | |||| || |||||||||||||||||| Sbjct 1008 ATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 1067 Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247 ||| || | | ||| | | ||||| | | || |||| ||||||||||||| Sbjct 1068 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1127 Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307 ||| ||||| ||||||| || || |||||||| || || || || || | ||| ||||| Sbjct 1128 GTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGC 1187 Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367 ||||| ||||| || ||||| || || || ||||| || || | || || |||| Sbjct 1188 TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1247 Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427 || |||||||| || || ||||| || || ||||||||||| | || |||| || || Sbjct 1248 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAA 1307 Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487 | || || | | | ||||| ||||||| ||||| ||||| || | || || Sbjct 1308 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1367 Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| || | ||| ||||| |||||||||||| Sbjct 1368 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1400 >seq17927 Length=56337 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 5016 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 4957 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 4956 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAAGTC 4897 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || |||||||||||||| || | ||| Sbjct 4896 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGCGTAGG 4837 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 4836 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 4777 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 4776 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 4717 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 4716 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 4657 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 4656 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 4597 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | || | | ||| || || |||||||||||||| ||||| | Sbjct 4596 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 4537 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||||| | || || || || || || |||||||| Sbjct 4536 GTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACACCAAAA 4477 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| || || || || ||||| || || |||||||| ||||| Sbjct 4476 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 4417 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| |||||||| || ||||||||||| || || || | | || ||| || || Sbjct 4416 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 4358 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| | || || || |||||||| || ||||| Sbjct 4357 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 4298 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || |||||||| || ||||| |||||||| Sbjct 4297 AGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 4238 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 || | | | ||||| | | | | ||||||||| || || ||||| || | || Sbjct 4237 CAGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTTAAAAA 4178 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| || | || ||||| ||||| || || || || Sbjct 4177 ATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 4118 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || ||| ||| || || | ||||| || Sbjct 4117 TGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACCAGA 4058 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 4057 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 4004 >seq14836 Length=433140 Score = 116 bits (128), Expect = 5e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 10213 TCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTCAGA 10272 || || ||||||| | | |||| ||| ||| || || |||| ||||| || || Sbjct 174632 TCTTCTTCTTTGTGAGTTTCAATGACAACATCAGAAGTAGGGTAAGCTACACAAGTGAGG 174573 Query 10273 AGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC-GATTGATCGCTTTGATCTACCGT 10331 | | |||||| | ||||| ||||||||||||||| |||| ||| | || || | | Sbjct 174572 ACATAGCCAGCAGCCATCTGATCATCATCAAGGAACTGATT-ATCTGTCTGGTCAATATT 174514 Query 10332 ACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAG 10391 ||| || | | ||| || ||||| || ||||| | ||||| ||||| ||| | | Sbjct 174513 ACCAGACACAACTTTACCAGCACAGCTTGAACAAGAACCAGAACGGCAAGAGAAAGGCAA 174454 Query 10392 GTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACACTCAA 10447 |||||| || |||||||||||||| || |||| ||| ||||||| |||| |||| Sbjct 174453 GTCAATTCCAGCTTCTTCAGCAGCGTCAAGAACGTAGACATCGTCATCACATTCAA 174398 >seq17628 Length=99897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAAACACAGGT 10268 || |||| ||||||| | | || ||||||||| | | | ||| |||| ||||| || Sbjct 84310 AGCTCATTTTCTTTGTGTGTATGAATCACACAATCTGATTGCGGG-TAAGCTACACAAGT 84368 Query 10269 CAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTAC 10328 ||| | | | ||| |||||| | ||||||||||||||| ||| ||||| || Sbjct 84369 CAGTACGTAGCCATTCTCGATCATATTATCATCAAGGAACGAACCATCTGACTGATCAAC 84428 Query 10329 CGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTT 10388 | || || || |||||||| | |||| || ||||||| ||||||||| Sbjct 84429 ACTTCCTTTTTCGATCTTCCCTGCACACGTGCAACACGCTCCAGCTCTGCACGAGTAAGG 84488 Query 10389 GAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 || |||| |||||||||||||| || || |||||||| || || || Sbjct 84489 CAGTTCAACTCCTGCTTCTTCAGCTGCGTCGAGAATGTATTGGTCCTC 84536 >seq12403 Length=479826 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||| | ||||| || |||| | || || ||||| ||||| || | || Sbjct 152553 GTTGGATACGCTACACAAGTAAGAACATATCCTTCACTCATCTGTTCATCTTCTAAAAAA 152612 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368 ||||| |||||| || | || | | | ||| ||||||||||| ||||| | | Sbjct 152613 CTCTGATCTGATTGATCAACAGATCCAGCCACTACTTTCCCTGCACAACTTGAACAAGAA 152672 Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 ||||| ||||||||||| | |||| || ||||||||||| ||||| |||| || Sbjct 152673 CCAGCACGGCACGAGTAAGGCAAATCAAGACCAGCTTCTTCAGCTGCATCAAGAACATAA 152732 Query 10429 TGATCGTCAGCACACTCAA 10447 ||| ||| |||| |||| Sbjct 152733 ACATCATCATCACATTCAA 152751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621982395633280