Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 655 0.0
seq17927 551 7e-152
seq14836 116 5e-21
seq17628 98.7 1e-15
seq12403 84.2 3e-11
>seq11797
Length=28381
Score = 655 bits (726), Expect = 0.0
Identities = 741/993 (75%), Gaps = 0/993 (0%)
Strand=Plus/Plus
Query 7528 CTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCAT 7587
|||| || |||| ||||| ||||||||||||||||||||||| || ||||| ||||||||
Sbjct 408 CTCAACAACAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 467
Query 7588 GCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATC 7647
||||| ||||||||| | | || ||||| || || | ||||| ||||||| |||
Sbjct 468 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGCCCTTGACTATC 527
Query 7648 AATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAG 7707
|| | || |||||||| ||||| || || | ||| |||||||| || |||| ||| |
Sbjct 528 AACTACAGATTGGTTGAAATTGAATCCATTTAAGTTAAATGCCATAGTACTAATACCTAA 587
Query 7708 AGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGA 7767
|||||| ||||| || || || || ||||| || || | |||||| || | ||||| ||
Sbjct 588 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 647
Query 7768 GTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGAT 7827
|||||||| ||| ||||||||||||| || ||||| || || |||||||| || ||
Sbjct 648 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 707
Query 7828 GTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGT 7887
|||||| || ||||||||||||||||| | ||||| | || || ||| || ||
Sbjct 708 GTTGTAAGTTTCTTCTTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 767
Query 7888 GGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACC 7947
|||||| | | || | ||| ||||| | ||||||||||| ||||| || || || ||
Sbjct 768 GGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCC 827
Query 7948 ACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGC 8007
|| || |||||||| || || | |||||| || |||||||| || ||||| ||||| ||
Sbjct 828 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTATGCTCAGC 887
Query 8008 TTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAA 8067
||||| |||| |||| ||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 888 CTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 947
Query 8068 AGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGA 8127
|||||||| | |||||||| | ||| || |||| || || ||||| ||||| ||
Sbjct 948 GCTTCCTTGACCAATAGGATAGATCAAGAAAACTGCAGTAGCAGCTGCAACAGGAGCTGA 1007
Query 8128 GTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACC 8187
||||| ||| ||||| ||||||||||| | |||| || ||||||||||||||||||
Sbjct 1008 ATATGCAACAGCAATCCAAGGACGCATACCCAAACGGAAACTAAGTTCCCACTCACGACC 1067
Query 8188 CATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTT 8247
||| || | | ||| | | ||||| | | || |||| |||||||||||||
Sbjct 1068 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 1127
Query 8248 GTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307
||| ||||| ||||||| || || |||||||| || || || || || | ||| |||||
Sbjct 1128 GTATAGCCATTCATCAACGGATGCAGCTTCCCAAATTGGGTAAAAATGCAAACCGATAGC 1187
Query 8308 GTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGC 8367
||||| ||||| || ||||| || || || ||||| || || | || || ||||
Sbjct 1188 TGCAGAAGTAGGAATAATTGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 1247
Query 8368 GACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA 8427
|| |||||||| || || ||||| || || ||||||||||| | || |||| || ||
Sbjct 1248 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATAAATGCGATAATAAA 1307
Query 8428 ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAG 8487
| || || | | | ||||| ||||||| ||||| ||||| || | || ||
Sbjct 1308 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1367
Query 8488 ACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520
||| || | ||| ||||| ||||||||||||
Sbjct 1368 ACGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1400
>seq17927
Length=56337
Score = 551 bits (610), Expect = 7e-152
Identities = 732/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Minus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| | || || ||||| |||| || ||||||||| || |||||
Sbjct 5016 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 4957
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | |||||| || || || || || || || ||||| |||
Sbjct 4956 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTGTAGAAAGTC 4897
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442
|| || || ||||| |||||||| | ||| || || |||||||||||||| || | |||
Sbjct 4896 TCAAATTCCGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCGCGTAGG 4837
Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502
|| | || ||||| | | |||| | |||| | ||| | || || |||||
Sbjct 4836 TTCAAAGCTAGACCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGGTACAAAT 4777
Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562
| |||||||||||||| |||||| |||||| || || | |||||||| || |||||
Sbjct 4776 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGTGACCAA 4717
Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622
|| || ||||| |||||||| ||||| || || || |||| || || | ||| || |
Sbjct 4716 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 4657
Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682
|| ||||||| |||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 4656 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 4597
Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742
|| || |||| || | || | | ||| || || |||||||||||||| ||||| |
Sbjct 4596 GCGCATAGCAGAGCCGCGCCCAGTACACCGGCGACTCCCATCATATGAAATGGGTTCAAT 4537
Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802
||||| || || || || || | ||||| | || || || || || || ||||||||
Sbjct 4536 GTCCAATTATGAAACCCTTGGAAAAAGAGGATAAATCGAAAAATAGCCGCTACACCAAAA 4477
Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862
|||||||||||||||| || || || || ||||| || || |||||||| |||||
Sbjct 4476 CTAGGCGCAAAGAACCAACCAGATTGACCTAGTGGATAAATTAGGAAGACAGAAACAAAA 4417
Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921
|||||||| |||||||| || ||||||||||| || || || | | || ||| || ||
Sbjct 4416 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGC 4358
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
| ||||| || || | ||| |||||||| | || || || |||||||| || |||||
Sbjct 4357 AAGTTCAAATTGACGTAACATAAAACCTATTAATGCGAAAGCGCCGTGGAGAGCAACAAA 4298
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| ||| || || || | ||| ||| || |||||||| || ||||| ||||||||
Sbjct 4297 AGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 4238
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|| | | | ||||| | | | | ||||||||| || || ||||| || | ||
Sbjct 4237 CAGTAACAACAACGAATGCGCTAAACTATTAGCAGGAGTAGAAACCGCAGCGGTTAAAAA 4178
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
||| || || || | ||| ||| || | || ||||| ||||| || || || ||
Sbjct 4177 ATTGCAACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGT 4118
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
||| || |||| |||||| || | || | || ||| ||| || || | ||||| ||
Sbjct 4117 TGTACCTGTGAACCAACCCCCTAAAGCAAAATAGGCACAAGGAAAGAGCAATAGACCAGA 4058
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275
|||||| ||||||||||| | || | | | ||||||||| | | ||||||
Sbjct 4057 CCAACCTACAAAAACGAAGCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 4004
>seq14836
Length=433140
Score = 116 bits (128), Expect = 5e-21
Identities = 169/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 10213 TCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGTCAGA 10272
|| || ||||||| | | |||| ||| ||| || || |||| ||||| || ||
Sbjct 174632 TCTTCTTCTTTGTGAGTTTCAATGACAACATCAGAAGTAGGGTAAGCTACACAAGTGAGG 174573
Query 10273 AGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC-GATTGATCGCTTTGATCTACCGT 10331
| | |||||| | ||||| ||||||||||||||| |||| ||| | || || | |
Sbjct 174572 ACATAGCCAGCAGCCATCTGATCATCATCAAGGAACTGATT-ATCTGTCTGGTCAATATT 174514
Query 10332 ACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAG 10391
||| || | | ||| || ||||| || ||||| | ||||| ||||| ||| | |
Sbjct 174513 ACCAGACACAACTTTACCAGCACAGCTTGAACAAGAACCAGAACGGCAAGAGAAAGGCAA 174454
Query 10392 GTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAGCACACTCAA 10447
|||||| || |||||||||||||| || |||| ||| ||||||| |||| ||||
Sbjct 174453 GTCAATTCCAGCTTCTTCAGCAGCGTCAAGAACGTAGACATCGTCATCACATTCAA 174398
>seq17628
Length=99897
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 10210 AGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAAACACAGGT 10268
|| |||| ||||||| | | || ||||||||| | | | ||| |||| ||||| ||
Sbjct 84310 AGCTCATTTTCTTTGTGTGTATGAATCACACAATCTGATTGCGGG-TAAGCTACACAAGT 84368
Query 10269 CAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTAC 10328
||| | | | ||| |||||| | ||||||||||||||| ||| ||||| ||
Sbjct 84369 CAGTACGTAGCCATTCTCGATCATATTATCATCAAGGAACGAACCATCTGACTGATCAAC 84428
Query 10329 CGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTT 10388
| || || || |||||||| | |||| || ||||||| |||||||||
Sbjct 84429 ACTTCCTTTTTCGATCTTCCCTGCACACGTGCAACACGCTCCAGCTCTGCACGAGTAAGG 84488
Query 10389 GAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436
|| |||| |||||||||||||| || || |||||||| || || ||
Sbjct 84489 CAGTTCAACTCCTGCTTCTTCAGCTGCGTCGAGAATGTATTGGTCCTC 84536
>seq12403
Length=479826
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/199 (69%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308
|| ||||| | ||||| || |||| | || || ||||| ||||| || | ||
Sbjct 152553 GTTGGATACGCTACACAAGTAAGAACATATCCTTCACTCATCTGTTCATCTTCTAAAAAA 152612
Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCA 10368
||||| |||||| || | || | | | ||| ||||||||||| ||||| | |
Sbjct 152613 CTCTGATCTGATTGATCAACAGATCCAGCCACTACTTTCCCTGCACAACTTGAACAAGAA 152672
Query 10369 CCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428
||||| ||||||||||| | |||| || ||||||||||| ||||| |||| ||
Sbjct 152673 CCAGCACGGCACGAGTAAGGCAAATCAAGACCAGCTTCTTCAGCTGCATCAAGAACATAA 152732
Query 10429 TGATCGTCAGCACACTCAA 10447
||| ||| |||| ||||
Sbjct 152733 ACATCATCATCACATTCAA 152751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621982395633280
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