Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14413 105 5e-18 seq17130 87.8 1e-12 seq16577 87.8 1e-12 seq14499 86.0 4e-12 seq16023 84.2 2e-11 >seq14413 Length=739167 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| || | | ||| | || || | |||||||||| |||| Sbjct 402206 TCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAG 402265 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | |||||| || | ||| | |||||| ||||| || || |||| ||| Sbjct 402266 ATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAA-CGTT 402324 Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || |||||| |||||| || ||||| ||||| || || || || ||||| ||||| Sbjct 402325 GTCAATGGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTAC 402384 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 402385 GAAGATCTGCAT 402396 >seq17130 Length=165301 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||||| || || ||||| | ||| ||| || || ||||| ||||| || Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | || || | |||||| ||| | |||||||| || ||||| |||| || Sbjct 19727 AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGG 19786 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || ||| | | |||| | ||| || | ||| | Sbjct 19787 ATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGAT--TGTATCAGATGATTCAA 19844 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || |||||||| ||||| | |||||| |||||||||||||| Sbjct 19845 CCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893 >seq16577 Length=433012 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || || |||||||| | | || | || || | |||||| || | || Sbjct 33662 TTCCTTCTGGATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAA 33721 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TC 39645 ||| ||||| |||||||||| || | |||||||| || || || ||| | | Sbjct 33722 AATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATT 33781 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| | ||| |||| ||| || || | ||| || ||||||||||||| ||||| Sbjct 33782 GTCGAT--TGTATCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTC 33839 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 33840 ACGAAGATCTGCAT 33853 >seq14499 Length=662897 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||| || ||||| ||||| |||||||| || || |||| Sbjct 223952 AGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAAGGTACGGCCATCT 224011 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | |||||| || | || || | | ||||||||| | || | ||||| ||||| Sbjct 224012 TCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCT 224071 Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687 || ||| ||||| | | | ||||||| ||| || || || | ||| || ||| Sbjct 224072 TGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACCTCGAGAGTGATGGTT 224131 Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | |||||||||||||| ||||| Sbjct 224132 TTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT--TTTTGTATATTATAATCGG 39550 || || || | |||||| |||| || ||||| | || || || ||||| ||||| | Sbjct 223481 CCACCACGAAGACGCAGGACCAGGTG--AAGTGTTGACTCCTTCTGAATATTGTAATCAG 223538 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | | || |||| || | ||||| ||| | || || | | |||||| |||| | Sbjct 223539 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTG 223598 Query 39611 GTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||||||||| | || || || || ||| | ||||||| |||||| Sbjct 223599 GGATACCTTCTTTGTCTTGGATCTTAGCCTTTACATTATCG--ATGGTGTCTGAGCTTTC 223656 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || || | ||||| ||||| |||||||| Sbjct 223657 AACTTCCAAAGTTATGGTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCAT 223707 >seq16023 Length=121467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || || || || || || || ||||| Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | || || ||| | || || | ||| ||||| |||| || Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||||| ||| | | | ||||| | ||| || || Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCTTTAA-CGTTGTCGATGGTGTCAGAGCTCTCAAC 24793 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || ||||| || || || ||||| |||||||||||||| Sbjct 24794 CTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347292074921096