Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq14413 105 5e-18
seq17130 87.8 1e-12
seq16577 87.8 1e-12
seq14499 86.0 4e-12
seq16023 84.2 2e-11
>seq14413
Length=739167
Score = 105 bits (116), Expect = 5e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || ||||| ||||| || | | ||| | || || | |||||||||| ||||
Sbjct 402206 TCCTTCTGGATATTGTAATCCGCAAGAGTGCGACCGTCTTCAAGTTGTTTCCCGGCAAAG 402265
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | |||||| || | ||| | |||||| ||||| || || |||| |||
Sbjct 402266 ATGAGTCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAA-CGTT 402324
Query 39649 GCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | || |||||| |||||| || ||||| ||||| || || || || ||||| |||||
Sbjct 402325 GTCAATGGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTTAC 402384
Query 39708 GAAGATCTGCAT 39719
||||||||||||
Sbjct 402385 GAAGATCTGCAT 402396
>seq17130
Length=165301
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| ||||| || || ||||| | ||| ||| || || ||||| ||||| ||
Sbjct 19667 CCTCCTCTTAAACGGAGAACTAAATGAAGAGTTGATTCCTTCTGGATATTGTAATCAGCT 19726
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| | | || || | |||||| ||| | |||||||| || ||||| |||| ||
Sbjct 19727 AATGTCCTGCCGTCTTCTAGTTGTTTTCCGGCGAAAATTAACCGTTGCTGGTCCGGTGGG 19786
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || || ||| | | |||| | ||| || | ||| |
Sbjct 19787 ATACCTTCCTTGTCTTGGATCTTCGATTTGACATTGTCGAT--TGTATCAGATGATTCAA 19844
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | || |||||||| ||||| | |||||| ||||||||||||||
Sbjct 19845 CCTCAAGGGTGATTGTTTTCCCCGTGAGAGTTTTCACGAAGATCTGCAT 19893
>seq16577
Length=433012
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587
||| || || || || |||||||| | | || | || || | |||||| || | ||
Sbjct 33662 TTCCTTCTGGATGTTGTAATCGGCAAGAGTACGACCGTCTTCGAGTTGTTTTCCAGCGAA 33721
Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TC 39645
||| ||||| |||||||||| || | |||||||| || || || ||| | |
Sbjct 33722 AATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCCTGAATCTTGGCTTTGACATT 33781
Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705
|||| | ||| |||| ||| || || | ||| || ||||||||||||| |||||
Sbjct 33782 GTCGAT--TGTATCTGATGATTCGACTTCAAGAGTTATCGTTTTACCCGTTAGGGTTTTC 33839
Query 39706 ACGAAGATCTGCAT 39719
||||||||||||||
Sbjct 33840 ACGAAGATCTGCAT 33853
>seq14499
Length=662897
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| ||||| || | ||| || ||||| ||||| |||||||| || || ||||
Sbjct 223952 AGAACCAAGTGTAGAGTTGACTCCTTTTGGATATTGTAATCGGCTAAGGTACGGCCATCT 224011
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | |||||| || | || || | | ||||||||| | || | ||||| |||||
Sbjct 224012 TCGAGTTGTTTGCCTGCGAAGATAAGTCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCT 224071
Query 39628 CATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTT 39687
|| ||| ||||| | | | ||||||| ||| || || || | ||| || |||
Sbjct 224072 TGGATCTTTGCTTTAACATTATCGATGGTGTCTGAGCTCTCAACCTCGAGAGTGATGGTT 224131
Query 39688 TTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | |||||||||||||| |||||
Sbjct 224132 TTGCCAGTGAGGGTTTTTACGAAGATTTGCAT 224163
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT--TTTTGTATATTATAATCGG 39550
|| || || | |||||| |||| || ||||| | || || || ||||| ||||| |
Sbjct 223481 CCACCACGAAGACGCAGGACCAGGTG--AAGTGTTGACTCCTTCTGAATATTGTAATCAG 223538
Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
| | | || |||| || | ||||| ||| | || || | | |||||| |||| |
Sbjct 223539 CAAGAGTCCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGTG 223598
Query 39611 GTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
| | ||||||||||| | || || || || ||| | ||||||| ||||||
Sbjct 223599 GGATACCTTCTTTGTCTTGGATCTTAGCCTTTACATTATCG--ATGGTGTCTGAGCTTTC 223656
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| || ||||| || || | ||||| ||||| ||||||||
Sbjct 223657 AACTTCCAAAGTTATGGTTTTGCCAGTAAGGGTTTTGACGAAAATCTGCAT 223707
>seq16023
Length=121467
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | || || || || || || || |||||
Sbjct 24615 CCACCACGTAGACGAAGGACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCT 24674
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| ||| |||| || | || || ||| | || || | ||| ||||| |||| ||
Sbjct 24675 AAAGTGCGACCATCCTCAAGCTGCTTACCGGCGAAGATGAGACGTTGCTGGTCCGGTGGG 24734
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| || |||||||| ||||| ||||| ||| | | | ||||| | ||| || ||
Sbjct 24735 ATTCCCTCTTTGTCCTGGATTTTGGCTTTAA-CGTTGTCGATGGTGTCAGAGCTCTCAAC 24793
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | || || ||||| || || || ||||| ||||||||||||||
Sbjct 24794 CTCAAGGGTGATGGTTTTGCCGGTCAAGGTTTTAACGAAGATCTGCAT 24841
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347292074921096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |