Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14462 154 2e-32 seq16580 113 6e-20 seq17304 104 3e-17 >seq14462 Length=746139 Score = 154 bits (170), Expect = 2e-32 Identities = 402/604 (67%), Gaps = 13/604 (2%) Strand=Plus/Plus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780 || || || || |||| || | | |||||||| | ||||||| | | || ||||| Sbjct 137328 GAGCCGCTTCTTACCCCAACCCCAGACAGATTTTGTATGTTCCCGATTCAATACCCACAG 137387 Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTC 101840 ||||||| | || |||||||| | | ||||||||| || || || ||||| Sbjct 137388 ATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTA 137447 Query 101841 TCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 101898 ||| |||| ||||| ||||| ||| | |||| || ||| | ||||| || Sbjct 137448 TCACAGGAC--GGACGCGATTGGGAGAATTTAAACGACGGCGAACGACACTTCATCAAGC 137505 Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCA-ATAACAAC 101957 | || | || ||||| || | || ||||| || || || |||||| | || | | Sbjct 137506 ATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCTTGCATCTCGA- 137564 Query 101958 TTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAA 102016 || || || || || || || ||| | ||||||| | | |||| | Sbjct 137565 -TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGCTTTCTACGGATTTCAAATCGCGAT 137623 Query 102017 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076 ||| | | ||| ||||| || ||| ||| | || | || || ||||| Sbjct 137624 TGAGAATATTCATTCGGAGATGTATAGTCTACTTCTTGATACCTACATCAAGGACAACAA 137683 Query 102077 TGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGG 102135 || |||| | || |||||| || ||| ||||| | || ||| || ||||||||| Sbjct 137684 AGA-AAGAGACCATCTCTTTCGCGCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGC 137742 Query 102136 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 102195 | ||||| |||| ||| | || | || | ||||||| ||||| || | || | Sbjct 137743 AATGGGCGATGACTTGGATCGACGGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCT 137799 Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255 | || || ||||| |||||||||||||| ||| |||||| | |||| ||||| || | Sbjct 137800 TCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAA 137859 Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 102315 | |||||||||||||| || ||| ||||||||||||| | ||||| || ||||| || | Sbjct 137860 AACGAGGTCTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCC 137919 Query 102316 TCCA 102319 |||| Sbjct 137920 TCCA 137923 >seq16580 Length=224205 Score = 113 bits (124), Expect = 6e-20 Identities = 310/466 (67%), Gaps = 22/466 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 || || ||||| | | || ||||| || | |||| ||| ||||| |||| ||| Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGT---GTTACCCTCA 139804 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| |||| ||||| || | ||| ||||| | ||||||||| || Sbjct 139805 AACCCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT--- 139861 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| || | | | ||| | || || || || || ||||| | ||||| ||| Sbjct 139862 CCACCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATG 139921 Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 ||||| |||||| || ||| ||| ||||| || || | ||| || ||||| Sbjct 139922 CATGGAGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCTTGAGGCACCAACACC 139980 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| || || | | | | | || | || ||| || ||| || ||||| Sbjct 139981 AACAAACATCTCAACGAACTCGGAACCAG-AGATAGAGAAGAAAGGTACACCAGCTTCAC 140039 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||| ||| || | ||| || || || ||||| || ||| ||||| ||| Sbjct 140040 CAGCAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACAC 140099 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || ||| ||| ||| ||| | || | |||| || || | ||| ||||| || || Sbjct 140100 CTTTTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTAC-- 140157 Query 16330 TCTCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||||| || || | ||||| | |||| || ||||||| Sbjct 140158 -CACTTCCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATC 140202 >seq17304 Length=552903 Score = 104 bits (114), Expect = 3e-17 Identities = 250/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| | || || | ||| || || |||||| | |||| | || ||||| Sbjct 425591 CGATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCA 425650 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | || | || ||||| | | |||||||||||| ||||| || | ||| ||| Sbjct 425651 GCCAATACTATAACACCTGAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 || ||||| || | || ||||| | | | ||| ||||| | | || |||| | Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCC--ACCTCCCATTCCAGCTCCTCTCTGTCTTCCAA 425768 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC-GAGCGACTTCAAAG 16121 | |||||||||||||| ||||| || ||||| || || |||| | || ||||| Sbjct 425769 CAGCATCAATCTCATCTATGAACACAATGCACGG-TGCTTTTGACTTGGCTTTCTCAAAC 425827 Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | ||||| || || || | || || |||||||| || | |||||| || | | || | Sbjct 425828 AAATCCC-TA-ACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGACGCTG 425885 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 ||| || ||| || || | ||| || || | |||| || | ||||||||||| Sbjct 425886 CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGTCTTAC 425945 Query 16240 CCGTACCTGG 16249 | |||||||| Sbjct 425946 CAGTACCTGG 425955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620600312064640