Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 154 2e-32
seq16580 113 6e-20
seq17304 104 3e-17
>seq14462
Length=746139
Score = 154 bits (170), Expect = 2e-32
Identities = 402/604 (67%), Gaps = 13/604 (2%)
Strand=Plus/Plus
Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTGTGTTCCCCCTGAAGTATCCACAC 101780
|| || || || |||| || | | |||||||| | ||||||| | | || |||||
Sbjct 137328 GAGCCGCTTCTTACCCCAACCCCAGACAGATTTTGTATGTTCCCGATTCAATACCCACAG 137387
Query 101781 CTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTC 101840
||||||| | || |||||||| | | ||||||||| || || || |||||
Sbjct 137388 ATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTGGACTGCCGAGGAAGTCGATCTA 137447
Query 101841 TCAAAGGATTTGGACG--ATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAAT 101898
||| |||| ||||| ||||| ||| | |||| || ||| | ||||| ||
Sbjct 137448 TCACAGGAC--GGACGCGATTGGGAGAATTTAAACGACGGCGAACGACACTTCATCAAGC 137505
Query 101899 ACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCA-ATAACAAC 101957
| || | || ||||| || | || ||||| || || || |||||| | || | |
Sbjct 137506 ATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCGTCTTGGAGAATCTTGCATCTCGA- 137564
Query 101958 TTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAA 102016
|| || || || || || || ||| | ||||||| | | |||| |
Sbjct 137565 -TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGCTTTCTACGGATTTCAAATCGCGAT 137623
Query 102017 TGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGC 102076
||| | | ||| ||||| || ||| ||| | || | || || |||||
Sbjct 137624 TGAGAATATTCATTCGGAGATGTATAGTCTACTTCTTGATACCTACATCAAGGACAACAA 137683
Query 102077 TGAGAAGA-AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGG 102135
|| |||| | || |||||| || ||| ||||| | || ||| || |||||||||
Sbjct 137684 AGA-AAGAGACCATCTCTTTCGCGCAATCGAAACAATCCCGTGTGTTGCCAAGAAAGCGC 137742
Query 102136 ATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCAT 102195
| ||||| |||| ||| | || | || | ||||||| ||||| || | || |
Sbjct 137743 AATGGGCGATGACTTGGATCGACGGA---TCTCAAACCTTTGCGGAGCGTATCGTAGCCT 137799
Query 102196 TTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGA 102255
| || || ||||| |||||||||||||| ||| |||||| | |||| ||||| || |
Sbjct 137800 TCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTTTCTGCTCCATTTTCTGGCTTAAAA 137859
Query 102256 AGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGAC 102315
| |||||||||||||| || ||| ||||||||||||| | ||||| || ||||| || |
Sbjct 137860 AACGAGGTCTCATGCCTGGACTCACCTTCTCCAACGAGTTAATCTCACGAGACGAAGGCC 137919
Query 102316 TCCA 102319
||||
Sbjct 137920 TCCA 137923
>seq16580
Length=224205
Score = 113 bits (124), Expect = 6e-20
Identities = 310/466 (67%), Gaps = 22/466 (5%)
Strand=Plus/Plus
Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974
|| || ||||| | | || ||||| || | |||| ||| ||||| |||| |||
Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGT---GTTACCCTCA 139804
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034
|| ||||||||||| |||| ||||| || | ||| ||||| | ||||||||| ||
Sbjct 139805 AACCCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCT--- 139861
Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
|||| || | | | ||| | || || || || || ||||| | ||||| |||
Sbjct 139862 CCACCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATG 139921
Query 16092 CATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150
||||| |||||| || ||| ||| ||||| || || | ||| || |||||
Sbjct 139922 CATGGAGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCTTGAGGCACCAACACC 139980
Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209
|||||||||||| || || | | | | | || | || ||| || ||| || |||||
Sbjct 139981 AACAAACATCTCAACGAACTCGGAACCAG-AGATAGAGAAGAAAGGTACACCAGCTTCAC 140039
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269
| ||||| ||| || | ||| || || || ||||| || ||| ||||| |||
Sbjct 140040 CAGCAATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACAC 140099
Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
|| ||| ||| ||| ||| | || | |||| || || | ||| ||||| || ||
Sbjct 140100 CTTTTGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTAC-- 140157
Query 16330 TCTCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372
| ||||| || || | ||||| | |||| || |||||||
Sbjct 140158 -CACTTCCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATC 140202
>seq17304
Length=552903
Score = 104 bits (114), Expect = 3e-17
Identities = 250/370 (68%), Gaps = 10/370 (3%)
Strand=Plus/Plus
Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944
|||||||| | || || | ||| || || |||||| | |||| | || |||||
Sbjct 425591 CGATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCA 425650
Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|| | || | || ||||| | | |||||||||||| ||||| || | ||| |||
Sbjct 425651 GCCAATACTATAACACCTGAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062
|| ||||| || | || ||||| | | | ||| ||||| | | || |||| |
Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCC--ACCTCCCATTCCAGCTCCTCTCTGTCTTCCAA 425768
Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGC-GAGCGACTTCAAAG 16121
| |||||||||||||| ||||| || ||||| || || |||| | || |||||
Sbjct 425769 CAGCATCAATCTCATCTATGAACACAATGCACGG-TGCTTTTGACTTGGCTTTCTCAAAC 425827
Query 16122 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179
| ||||| || || || | || || |||||||| || | |||||| || | | || |
Sbjct 425828 AAATCCC-TA-ACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGACGCTG 425885
Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239
||| || ||| || || | ||| || || | |||| || | |||||||||||
Sbjct 425886 CACAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGTCTTAC 425945
Query 16240 CCGTACCTGG 16249
| ||||||||
Sbjct 425946 CAGTACCTGG 425955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620600312064640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |