Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq14462 109 6e-19
seq14680 100 3e-16
>seq14462
Length=746139
Score = 109 bits (120), Expect = 6e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566
||| || ||||| || || ||||| | ||| || |||| |||||||||||||| ||
Sbjct 137924 ATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACC 137865
Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
|| ||| || ||||| || |||| || ||||| || || |||||||| || || || ||
Sbjct 137864 TCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCA 137805
Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674
|||||| || | | |||||| ||||| | | |||| ||||| |||
Sbjct 137804 GGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGATCCGTCGATCCA 137757
>seq14680
Length=376954
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTG 111060
|| ||||| ||||| ||||| ||||| | |||||| ||||| | ||| ||||||
Sbjct 229555 GGAGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAA 229614
Query 111061 TTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATG 111120
| |||||| | || | | || | ||| | |||||| |||| ||||||| |||
Sbjct 229615 TGGTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATC 229674
Query 111121 AACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAAC-TCTTCTC 111179
||||||| |||||| |||||| | ||||| | || | ||||||| |||| ||
Sbjct 229675 AACATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTT-TC 229733
Query 111180 TAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221
|| || |||| || ||||| || | ||||||||||||||
Sbjct 229734 TAAAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATC 229775
Score = 84.2 bits (92), Expect = 3e-11
Identities = 130/184 (71%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829
|||| |||||| || || || |||| || ||||| ||||| |||| ||| |||| |||
Sbjct 229233 TGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCATTAGAT 229292
Query 110830 TGACCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGAATGTCGTGGATATGCATAC 110887
||||||||||| | ||| |||| | | ||||| || | || | | ||
Sbjct 229293 GTTCCATTTGTACCACGAAT--GTAACTTCCAGTTGCACGTATATTATGAACCGAAACAC 229350
Query 110888 CAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCAT 110947
|||||||||| || | || || || ||||||||| | |||||| |||| ||||| |
Sbjct 229351 CAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATACCCT 229410
Query 110948 CAAT 110951
||||
Sbjct 229411 CAAT 229414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588841183393600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |