Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq14462 109 6e-19 seq14680 100 3e-16 >seq14462 Length=746139 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| || ||||| || || ||||| | ||| || |||| |||||||||||||| || Sbjct 137924 ATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACC 137865 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||| || ||||| || |||| || ||||| || || |||||||| || || || || Sbjct 137864 TCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCA 137805 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674 |||||| || | | |||||| ||||| | | |||| ||||| ||| Sbjct 137804 GGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGATCCGTCGATCCA 137757 >seq14680 Length=376954 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTG 111060 || ||||| ||||| ||||| ||||| | |||||| ||||| | ||| |||||| Sbjct 229555 GGAGTTCCAGCATTAAAGAGAGTAGGAGATGCATGAGTGAACCATCTTTGAGACATCAAA 229614 Query 111061 TTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATG 111120 | |||||| | || | | || | ||| | |||||| |||| ||||||| ||| Sbjct 229615 TGGTATGTTTTGATTACAGAATCGATATCATGCTTGTGAATTCCAACAGCAACTCTCATC 229674 Query 111121 AACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAAC-TCTTCTC 111179 ||||||| |||||| |||||| | ||||| | || | ||||||| |||| || Sbjct 229675 AACATATGTTGAGGTCTTTCGACAACTTTTCCTTGCACTTTCAGAAGGTAGGATCTT-TC 229733 Query 111180 TAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || || |||| || ||||| || | |||||||||||||| Sbjct 229734 TAAAGTTTTGAATCCGAAGTAGTCATATTCGAAATCACGATC 229775 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| |||||| || || || |||| || ||||| ||||| |||| ||| |||| ||| Sbjct 229233 TGGTCAACATAACGAGCAGTATCATTAAACACCCTCAGCATTGGAACAATACCATTAGAT 229292 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGAATGTCGTGGATATGCATAC 110887 ||||||||||| | ||| |||| | | ||||| || | || | | || Sbjct 229293 GTTCCATTTGTACCACGAAT--GTAACTTCCAGTTGCACGTATATTATGAACCGAAACAC 229350 Query 110888 CAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCAT 110947 |||||||||| || | || || || ||||||||| | |||||| |||| ||||| | Sbjct 229351 CAATACCACCAGCAGATTTGCTTATAACAGCACACTCTTTAAGTGTATCATATATACCCT 229410 Query 110948 CAAT 110951 |||| Sbjct 229411 CAAT 229414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588841183393600