Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq16580 120 4e-22 seq17304 105 8e-18 seq14462 104 3e-17 >seq16580 Length=224205 Score = 120 bits (132), Expect = 4e-22 Identities = 307/462 (66%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || ||||| | | || || || || | |||| ||| ||||| | | ||||| Sbjct 139748 TCTAGAATATCTGCTCTGTTTGTTGCAGCAACTACAATAATGCCTGTGTTACCCTCAAAC 139807 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| |||| || || || | ||| ||||| | ||||||||| || | Sbjct 139808 CCATCCATCTCAGTCAGGAGCTGATTGAGAGTCTGTTCTCTTTCATCATTACCTCC---A 139864 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | ||| | || || || || || ||||| | |||||||| ||| Sbjct 139865 CCAATTCCGGTTCCTCTTTGTCTACCAACAGCGTCTATTTCATCTACAAAGACAATGCAT 139924 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || |||||| ||| | | || ||||| || |||||| ||| || ||||||||| Sbjct 139925 GGAGCATTTTCCTTGGCTTTCTTGAAAAGATCACGGACCCTTGAGGCACCAACACCAACA 139984 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| || || | | | | | || | || ||| || ||| || |||||| || Sbjct 139985 AACATCTCAACGAACTCGGAACCAG-AGATAGAGAAGAAAGGTACACCAGCTTCACCAGC 140043 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | ||| || || || ||||| || ||| ||||| |||| Sbjct 140044 AATAGCTTTTGCCAAAAGGGTTTTTCCAGTACCAGGAGGACCAATAAGGAGAACACCTTT 140103 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| ||| ||| ||| | || | |||| || || | ||| ||||| || || | | Sbjct 140104 TGGGATCCGGGCACCAACTGCAGTGAATCTTTCGGGCTTCTTCAGAAACTCTAC---CAC 140160 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||||| | |||| || ||||||| Sbjct 140161 TTCCATGAAATCCTGCTTGGCTTCATCAACTCCAGCAACATC 140202 >seq17304 Length=552903 Score = 105 bits (116), Expect = 8e-18 Identities = 247/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 |||||||| | || || | ||| || || |||||| | |||| | || || || Sbjct 425591 CGATCAAACCTTCCAGGTCTAAGAAGTGCAGAATCAAGAACATCAGGTCTGTTAGTTGCA 425650 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||||| | | |||||||||||| ||||| || | || ||| Sbjct 425651 GCCAATACTATAACACCTGAATTCCCAGAAAAACCATCCATTTCTGTTAACAACTGATTA 425710 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 || ||||| || | || ||||| | | | ||| ||||| | | || |||| | Sbjct 425711 ATCGTTTGCTCTCTCTCGTCATTTCCA--CCTCCCATTCCAGCTCCTCTCTGTCTTCCAA 425768 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCAAAG 9428 | |||||||||||||| ||||| ||||| || || || |||| | ||| | ||||| Sbjct 425769 CAGCATCAATCTCATCTATGAACACAATGCACGG-TGCTTTTGACTTGGCTTTCTCAAAC 425827 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 | ||| | ||| || || || |||||||| || | |||||| || | | || | | Sbjct 425828 AAATCCCTAACTCTAGACGCACCTACACCAACGAAAAGCTCCACGAACTCGGACGCTGCA 425887 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 || || ||| || || | ||| || || | |||| || | |||||||||||| Sbjct 425888 CAAGAGAAGAACGGTACTCCTGCTTCTCCAGCTACAGCTCTAGCTAAAAGAGTCTTACCA 425947 Query 9549 GTACCTGG 9556 |||||||| Sbjct 425948 GTACCTGG 425955 >seq14462 Length=746139 Score = 104 bits (114), Expect = 3e-17 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||| || || ||||| || || | || || |||||| || || ||||||||||| Sbjct 137923 TGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGCATGAGACCT 137864 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || || || | ||| |||| | |||||| ||||||||||||||||| || || || Sbjct 137863 CGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCTTCAACGCAG 137804 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCC 117465 || || || | | ||||| || |||| |||| | ||| | ||| |||| ||| Sbjct 137803 GCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGA---TCCGTCGATCCAAGTCATCGCC 137747 Query 117466 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| ||| ||||| ||| ||| || | |||| ||| || Sbjct 137746 CATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGC 137706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589845753394880