Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 589 3e-163
seq17927 587 9e-163
seq14836 107 2e-18
seq11514 82.4 9e-11
>seq11797
Length=28381
Score = 589 bits (652), Expect = 3e-163
Identities = 734/1003 (73%), Gaps = 2/1003 (0%)
Strand=Plus/Minus
Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798
|||| | |||||| | ||| ||||| || | ||||| || || | || |||||
Sbjct 1409 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1350
Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858
|| ||| ||||||| || || | ||| | |||||| | || || |||| || ||
Sbjct 1349 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATT 1290
Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918
|||||||| || || || || ||||| || |||||||| || |||| || || | ||
Sbjct 1289 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 1230
Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978
|| ||||| || || || |||||| || ||||| |||| || || ||| | || ||
Sbjct 1229 GGAAACAATATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTT 1170
Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038
|| || || |||||||| ||||| |||| || ||||| || ||||||||||||| ||
Sbjct 1169 TACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 1110
Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098
|| | || | ||||| | |||| | | || |||||||||||||||||||||
Sbjct 1109 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 1050
Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157
|| || ||||||||||| || ||||| ||| || |||||||| ||||| || || ||
Sbjct 1049 AGTTTCCGTTTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 991
Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217
|| |||| || ||| | |||||||| | |||||||| || ||||| | |||||
Sbjct 990 TGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCC 931
Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277
|| || || ||||| || ||||||| |||| |||| ||||| || ||||| ||||| ||
Sbjct 930 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCT 871
Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337
|||||||| || |||||| | || ||||| ||||| |||||||| || || || ||
Sbjct 870 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 811
Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397
||||| ||||| |||| || ||| || | | |||||||| |||| ||| ||
Sbjct 810 TATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 751
Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457
|| | ||||||| || |||||||||||||| || |||||||| || ||||| |||||
Sbjct 750 TAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGG 691
Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517
|| || || || |||||||||| ||||| |||||||| || ||||| | || ||
Sbjct 690 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 631
Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577
|||| | || || ||||| || || || || ||||| ||||| | || | || || ||
Sbjct 630 CTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTAT 571
Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637
|||||| ||| | || || ||||| |||||||| || | ||||| ||||||| |||||
Sbjct 570 GGCATTTAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGT 511
Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697
| || |||||||| || | | ||||| ||| || ||||||||||||||||| ||
Sbjct 510 TATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 451
Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAG 180740
|||||||||||||||||||| || ||||| || | || ||||
Sbjct 450 ACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408
>seq17927
Length=56337
Score = 587 bits (650), Expect = 9e-163
Identities = 740/1014 (73%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483
||||| || | ||||||||| | | |||||||| || ||||| || ||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543
||| | || ||||| ||| ||| |||| | ||||| ||| |||| || || || |||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603
|| || || ||||| || || |||||||| |||||| | || ||| ||||| |
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663
|| || || || || || |||||| | | | | ||||| | | |||| ||||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723
|||||||| || || ||||| || ||| ||| | || || || ||| |||||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782
|| |||||||| || ||||| | || ||||||||| | | |||||||||||||||||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842
||| || | | ||||| || ||||| || || || || ||||| |||||||| || ||
Sbjct 4364 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 4422
Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902
||||| || || || ||||| || || ||||| |||||||||||||||| ||||| ||
Sbjct 4423 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 4482
Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962
||| ||||| ||||| || || | ||||| |||| || |||||||||||||| | ||
Sbjct 4483 TGTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 4542
Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022
|| || ||||||||||| || || ||| | ||||| | || | || | || |||||
Sbjct 4543 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 4602
Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082
|||| || || || |||||| | | | |||| ||||| |||||||| ||| ||
Sbjct 4603 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 4662
Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142
|| | ||||||||| |||||||| ||||||||||| || || |||||||| |||||
Sbjct 4663 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 4722
Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202
|| ||||| || |||| ||| |||||| | ||||| |||||||||||| | |||||
Sbjct 4723 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 4782
Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262
|| || | ||| | |||| ||| | | || | | ||||| ||| | ||||| ||
Sbjct 4783 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 4842
Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322
|| ||||||||||| ||||| |||||| | ||| | ||||| || || || ||||| ||
Sbjct 4843 CGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 4902
Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382
|||||| || || ||||| || || |||||| | ||||| ||| | || | |||||
Sbjct 4903 CTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 4962
Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436
|| ||||| ||| || | ||||||||||| || |||| | || ||||| ||
Sbjct 4963 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
>seq14836
Length=433140
Score = 107 bits (118), Expect = 2e-18
Identities = 131/176 (74%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966
|||| |||||||| || ||||| || |||| || | || |||||| | ||| | |
Sbjct 174422 TTCTTGACGCTGCTGAAGAAGCTGGAATTGACTTGCCTTTCTCTTGCCGTTCTGGTTCTT 174481
Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATC-TTTC 172025
|||| ||||||||||||||| ||| | ||||| | || ||| |||| |||| |||
Sbjct 174482 GTTCAAGCTGTGCTGGTAAAGTTGTGTCTGGTAATATTGACCAGACAGA-TAATCAGTTC 174540
Query 172026 CTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081
|||||||||||||| |||| || || | || || || ||||| ||||| |||||
Sbjct 174541 CTTGATGATGATCAGATGGCTGCTGGCTATGTCCTCACTTGTGTAGCTTACCCTAC 174596
>seq11514
Length=7346
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313
|||||||||||||||| || ||||| | || ||||||| | ||||||||||||| |||
Sbjct 1350 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 1409
Query 141314 CCTACCTGGGGAG 141326
||||| |||||||
Sbjct 1410 CCTACTTGGGGAG 1422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610257080172480
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