Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq11797 520 1e-142 seq17927 385 6e-102 seq14352 123 3e-23 >seq11797 Length=28381 Score = 520 bits (576), Expect = 1e-142 Identities = 693/960 (72%), Gaps = 2/960 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || Sbjct 1360 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1301 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||| ||||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 1300 TCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1241 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| || || ||||| || || || |||||| || |||| | || |||||| Sbjct 1240 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATC 1182 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || |||||||| |||||||| ||| | |||||||||||| | || || ||| Sbjct 1181 GGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 1122 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | ||||| | ||||| | | || ||||| | Sbjct 1121 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1062 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | || || |||||||||||||| ||||||||| || || Sbjct 1061 GAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1002 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| || || ||||| | || || ||||||| || || ||| Sbjct 1001 CCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCT 942 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| |||||||||||||| ||| | || ||||| || ||| Sbjct 941 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 882 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 ||||||||||| ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 881 CATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 822 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 |||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 821 CTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 762 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | ||||| |||||||||||||| |||||||| ||| Sbjct 761 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 702 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 701 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 642 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| |||||| |||| | || || || ||| || | ||||| || || | ||| Sbjct 641 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 582 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || | || |||||||| ||||| ||||| ||||| || |||||||| || |||||| | Sbjct 581 ATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGT 522 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | | || |||| |||| || | ||| | || ||| | ||||||||| Sbjct 521 CAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 462 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400 |||||||||||| | ||||| ||||||||||| ||||||||||| || |||| || || Sbjct 461 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAGGCTCCA 402 >seq17927 Length=56337 Score = 385 bits (426), Expect = 6e-102 Identities = 706/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| ||||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || || || Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || || ||||| || |||| | | | ||| | |||| || ||||| Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| |||||||| ||| | || ||| | |||| ||||| Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || | | | |||||||| ||| | | |||||||| | || || Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| |||||||||||| | || || || || | Sbjct 4364 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 4423 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 |||| || || |||||||||||||| |||||||||| || || || ||| Sbjct 4424 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 4483 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || |||||||| | |||| | || | ||||| || || || |||||||| Sbjct 4484 GTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 4543 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || || || |||| || | || | |||| || |||||| Sbjct 4544 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 4603 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | |||||| | | || || |||| Sbjct 4604 GGTGCTACTGTAGAAAATACTTTATTTGAAGAT------GGTGATGGTGCAAATA----- 4652 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 4653 ----------CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 4702 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || |||||||| || ||||| ||||||| || || ||| | | ||| Sbjct 4703 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 4762 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 4763 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 4822 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 |||||||| | ||||| | || || || ||||| || || || || | ||||| ||| Sbjct 4823 GGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 4882 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || ||||||||||||||||| ||||| ||| | || |||||||| | || Sbjct 4883 GATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 4942 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || ||||| Sbjct 4943 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 5002 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 5003 CGTGGAAACGCTCTTTAA 5020 >seq14352 Length=826827 Score = 123 bits (136), Expect = 3e-23 Identities = 138/183 (75%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 153251 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 153310 ||| ||| || | ||||||||| |||||| || || ||||| |||||||||||||| Sbjct 398334 GCGTAACATTATGGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGAT 398393 Query 153311 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370 |||||||| || | ||| | | |||||| ||| ||| | || || || |||||||| Sbjct 398394 CTCTCAGGGGAGGCTTGAATCGCTTCTCAATTTCCAGACGGTGATAACGGATCTTACAGG 398453 Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GC 153429 | | || || ||||||| || | | ||||||| |||||||| ||||||||||| || Sbjct 398454 ACTTCCTATGTCAAACGCCTCGTTGCTTGATGAAGGGACTGCAGCTGCAGAAGCAATGGC 398513 Query 153430 TAT 153432 ||| Sbjct 398514 TAT 398516 Score = 107 bits (118), Expect = 2e-18 Identities = 179/257 (70%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777 || || |||| |||||| | || |||||||| ||| ||| |||||||||| Sbjct 398798 TGTTGAAACCGCCAGGTGAATTTGGTGCTGATATTGTTGTTGGTTCAGCTCAAAGGTTTG 398857 Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837 || |||| ||||| ||||| || || || || || ||||| || || || | | || | Sbjct 398858 GTGTTCCAATGGGTTATGGTGGCCCACACGCAGCTTTCTTGGCTACTTCACAAGAATACA 398917 Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895 |||||| ||| ||||| ||||| | | || ||| || || | ||| || |||| Sbjct 398918 AGAGAATGATGCCTGGAAGAATCATTGGTGTTAGT--GTTGACTCTTCAGGGAAGCAAGC 398975 Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955 | | | || | |||||||| || || ||||| | || |||||||| ||||| || Sbjct 398976 TTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGAAGGGACAAAGCTACCAGCAA 399035 Query 153956 CATCTGCACAGCTCAGG 153972 |||||| || ||||||| Sbjct 399036 CATCTGTACTGCTCAGG 399052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579080218190080