Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 520 1e-142
seq17927 385 6e-102
seq14352 123 3e-23
>seq11797
Length=28381
Score = 520 bits (576), Expect = 1e-142
Identities = 693/960 (72%), Gaps = 2/960 (0%)
Strand=Plus/Minus
Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501
|||| |||||||||||| | ||||| || |||| | || ||| | | ||| ||
Sbjct 1360 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 1301
Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561
| ||||| ||||| || ||||| || ||||| || || || | ||||| || | || |
Sbjct 1300 TCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1241
Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620
|| ||||| || || ||||| || || || |||||| || |||| | || ||||||
Sbjct 1240 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATC 1182
Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680
|| | || || |||||||| |||||||| ||| | |||||||||||| | || || |||
Sbjct 1181 GGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 1122
Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740
||||||||| | | | | | ||||| | ||||| | | || ||||| |
Sbjct 1121 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1062
Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800
|||||||||| | | | || || |||||||||||||| ||||||||| || ||
Sbjct 1061 GAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1002
Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860
|| || | ||||| || || ||||| | || || ||||||| || || |||
Sbjct 1001 CCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCT 942
Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920
||||||||||| ||||| ||||| |||||||||||||| ||| | || ||||| || |||
Sbjct 941 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 882
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980
||||||||||| ||||| || || |||||| ||| ||||| || | ||||| || ||
Sbjct 881 CATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 822
Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040
|||| || ||||||||||| | || ||||| | | ||||| ||||| |||||
Sbjct 821 CTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 762
Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100
| || || || | ||||| | ||||| |||||||||||||| |||||||| |||
Sbjct 761 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 702
Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160
|| || || ||||| ||||| || | |||||||| |||||| |||||||| || |
Sbjct 701 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 642
Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220
| |||| |||||| |||| | || || || ||| || | ||||| || || | |||
Sbjct 641 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 582
Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280
|| | || |||||||| ||||| ||||| ||||| || |||||||| || |||||| |
Sbjct 581 ATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGT 522
Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340
| || | | || |||| |||| || | ||| | || ||| | |||||||||
Sbjct 521 CAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 462
Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACA 170400
|||||||||||| | ||||| ||||||||||| ||||||||||| || |||| || ||
Sbjct 461 GTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGTTGTTGAGGCTCCA 402
>seq17927
Length=56337
Score = 385 bits (426), Expect = 6e-102
Identities = 706/1038 (68%), Gaps = 21/1038 (2%)
Strand=Plus/Plus
Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588
|||||| || | || ||||||||| ||| || || || || || |||| |||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648
|| || || | |||||||| || | | | || ||||||||| ||| || |||||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708
|| || ||||||||||| ||||| | || || ||| | || || || || || ||
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 4183
Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768
|| || || ||||| || |||| | | | ||| | |||| || |||||
Sbjct 4184 ACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGT 4243
Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828
|||||||||||||| ||| |||||||| ||| | || ||| | |||| |||||
Sbjct 4244 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 4303
Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888
|| | || || | || | | | |||||||| ||| | | |||||||| | || ||
Sbjct 4304 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 4363
Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948
||| | ||||||| || ||| |||||||||||| | || || || || |
Sbjct 4364 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 4423
Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008
|||| || || |||||||||||||| |||||||||| || || || |||
Sbjct 4424 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 4483
Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068
|| || || |||||||| | |||| | || | ||||| || || || ||||||||
Sbjct 4484 GTAGCGGCTATTTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 4543
Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128
|||||||| |||||||| || || || |||| || | || | |||| || ||||||
Sbjct 4544 CCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 4603
Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188
||||| || || | || || || | |||||| | | || || ||||
Sbjct 4604 GGTGCTACTGTAGAAAATACTTTATTTGAAGAT------GGTGATGGTGCAAATA----- 4652
Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248
|||||||||| ||| | || || || | ||||||||||| ||| |
Sbjct 4653 ----------CATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 4702
Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308
|| || ||| | || |||||||| || ||||| ||||||| || || ||| | | |||
Sbjct 4703 ACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 4762
Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368
|| ||| ||||||| || || || || | ||| | |||| || | || | ||
Sbjct 4763 CATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 4822
Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428
|||||||| | ||||| | || || || ||||| || || || || | ||||| |||
Sbjct 4823 GGTCTAGCTTTGAACCTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAA 4882
Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488
|| || || || ||||||||||||||||| ||||| ||| | || |||||||| | ||
Sbjct 4883 GATCCGGAATTTGAGACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 4942
Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548
|||||| | | || || || ||||| ||| | ||||||| || || || |||||
Sbjct 4943 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 5002
Query 171549 AGAGGTAACGCACTTTAA 171566
| || ||||| ||||||
Sbjct 5003 CGTGGAAACGCTCTTTAA 5020
>seq14352
Length=826827
Score = 123 bits (136), Expect = 3e-23
Identities = 138/183 (75%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 153251 GCGAAACGTTCTTGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGAT 153310
||| ||| || | ||||||||| |||||| || || ||||| ||||||||||||||
Sbjct 398334 GCGTAACATTATGGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGAT 398393
Query 153311 ATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGG 153370
|||||||| || | ||| | | |||||| ||| ||| | || || || ||||||||
Sbjct 398394 CTCTCAGGGGAGGCTTGAATCGCTTCTCAATTTCCAGACGGTGATAACGGATCTTACAGG 398453
Query 153371 ATTACCAATAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GC 153429
| | || || ||||||| || | | ||||||| |||||||| ||||||||||| ||
Sbjct 398454 ACTTCCTATGTCAAACGCCTCGTTGCTTGATGAAGGGACTGCAGCTGCAGAAGCAATGGC 398513
Query 153430 TAT 153432
|||
Sbjct 398514 TAT 398516
Score = 107 bits (118), Expect = 2e-18
Identities = 179/257 (70%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 153718 TGATGCAACCTGTAGGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTG 153777
|| || |||| |||||| | || |||||||| ||| ||| ||||||||||
Sbjct 398798 TGTTGAAACCGCCAGGTGAATTTGGTGCTGATATTGTTGTTGGTTCAGCTCAAAGGTTTG 398857
Query 153778 GTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATA 153837
|| |||| ||||| ||||| || || || || || ||||| || || || | | || |
Sbjct 398858 GTGTTCCAATGGGTTATGGTGGCCCACACGCAGCTTTCTTGGCTACTTCACAAGAATACA 398917
Query 153838 AGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGC 153895
|||||| ||| ||||| ||||| | | || ||| || || | ||| || ||||
Sbjct 398918 AGAGAATGATGCCTGGAAGAATCATTGGTGTTAGT--GTTGACTCTTCAGGGAAGCAAGC 398975
Query 153896 ATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAA 153955
| | | || | |||||||| || || ||||| | || |||||||| ||||| ||
Sbjct 398976 TTTGCGTATGGCTATGCAGACTAGGGAACAACATATTCGAAGGGACAAAGCTACCAGCAA 399035
Query 153956 CATCTGCACAGCTCAGG 153972
|||||| || |||||||
Sbjct 399036 CATCTGTACTGCTCAGG 399052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579080218190080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |