Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 578 5e-160
seq17927 533 2e-146
>seq11797
Length=28381
Score = 578 bits (640), Expect = 5e-160
Identities = 724/993 (73%), Gaps = 0/993 (0%)
Strand=Plus/Minus
Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922
||||| | ||| |||| ||| | ||||| || || | || ||||| || || ||
Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341
Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 167982
||||| || || | ||| | |||||| | ||| || |||| || | ||||||||
Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281
Query 167983 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 168042
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221
Query 168043 ATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATC 168102
|| || || |||||| || | ||| ||||| ||||| || | || || || || ||
Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161
Query 168103 TGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTC 168162
|||||||| ||||| | ||||| ||| | || ||||||||||||| ||||| | ||
Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101
Query 168163 TTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGT 168222
| ||||| | | ||| | | || ||||| ||||| ||||||||| | |||
Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041
Query 168223 TTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCA 168282
|| ||||||||||| ||||| ||||||||| || || || || || || || | ||||
Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981
Query 168283 GTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATC 168342
|| ||| | | |||||| | |||||||| || || ||||||| ||||| || ||||||
Sbjct 980 GTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 921
Query 168343 TCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCC 168402
|| || || ||||||| |||| | || ||||| |||||||| || ||||| ||||| ||
Sbjct 920 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCA 861
Query 168403 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 168462
|| || ||| | || || ||||| ||||| || ||| | |||||||||||||| ||
Sbjct 860 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 801
Query 168463 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 168522
|||||| |||||| | | | || || || || |||| ||||| || | |||
Sbjct 800 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 741
Query 168523 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 168582
|||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| || ||
Sbjct 740 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 681
Query 168583 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 168642
|| |||||||||||||| ||| |||||||| || || || || || |||||| | ||
Sbjct 680 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 621
Query 168643 GCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAAC 168702
|| ||||| || || || || ||||| || || | || | || |||||||| |||
Sbjct 620 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAAC 561
Query 168703 CTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 168762
| || || ||||| |||||||| || | ||||| |||| || ||||| | || ||
Sbjct 560 TTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACT 501
Query 168763 TGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCA 168822
||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| ||
Sbjct 500 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 441
Query 168823 CACAACTTCCCACTCGATCTTGCTGCTGCTGAG 168855
||||||||||| || || || |||| || ||||
Sbjct 440 CACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408
>seq17927
Length=56337
Score = 533 bits (590), Expect = 2e-146
Identities = 731/1019 (72%), Gaps = 12/1019 (1%)
Strand=Plus/Plus
Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366
|| ||| || | ||||||||| | | |||||||| || || | ||||||||||||
Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063
Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426
||| | || |||| ||||||| ||||| | || || ||| |||| |||||| | |||
Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123
Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483
|| ||||| ||||| || || ||| | || |||| || |||||||| || ||
Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCC---TATTTAGAAGGTTGCAATTTT 4180
Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543
| || ||||| || ||| |||||| | | | | || || || | || || |||
Sbjct 4181 TTAACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGG 4240
Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603
||||| ||||||||||| ||||| ||| ||||||||||| |||||||| |||| |||
Sbjct 4241 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 4300
Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663
|| || || || || || || ||||| || ||||| ||| | | || |||||| | ||
Sbjct 4301 GTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 4360
Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723
|| | || | || ||||||||||| || |||||||||||||| |||||||| |||
Sbjct 4361 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 4420
Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783
|| |||||| || || || ||||| || || || ||||||||||| || |||
Sbjct 4421 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 4480
Query 169784 GGAGTATCAGCAATCTTCAGGT---TCCTGTTGTTCCTGCAAGGATTCCACAACTGGACG 169840
|| ||| | || || || | | |||| || ||| ||||| || || || |||||
Sbjct 4481 GGTGTAGCGGCTATTTTTCGATTTATCCTCTTTTTC---CAAGGGTTTCATAATTGGACA 4537
Query 169841 TTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCT 169900
||||| ||||| || |||||||| || || || | |||||| || |||| | |||
Sbjct 4538 TTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCT 4597
Query 169901 ATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTC 169960
|| ||||||| ||| ||||| || || || | |||||| ||||| |||||||| |||
Sbjct 4598 ATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 4657
Query 169961 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 170020
|| ||| | | || || | ||||| |||||||| |||||||| || ||||||||
Sbjct 4658 CGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTT 4717
Query 170021 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTG 170080
||||| || ||||| || |||| ||||| || || |||||| | ||||| || |||||
Sbjct 4718 TGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 4777
Query 170081 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 170140
||||| || || | ||| | |||| || |||| | | || || ||| | ||
Sbjct 4778 TTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAAC 4837
Query 170141 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 170200
|| || || || || || || ||||| ||| | ||||| |||||||| |||||||||
Sbjct 4838 CTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAG 4897
Query 170201 ACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCT 170260
|| |||||||| ||||| || || || || ||||| ||||||| ||| |||| ||
Sbjct 4898 ACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAA 4957
Query 170261 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319
||||| || ||||||||| | || ||||| || || ||||| || | || ||||| ||
Sbjct 4958 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574342102992960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |