Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq11797 578 5e-160 seq17927 533 2e-146 >seq11797 Length=28381 Score = 578 bits (640), Expect = 5e-160 Identities = 724/993 (73%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | ||||| || || | || ||||| || || || Sbjct 1400 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1341 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCC 167982 ||||| || || | ||| | |||||| | ||| || |||| || | |||||||| Sbjct 1340 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTTATTGCTGCTCCT 1281 Query 167983 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAAC 168042 || || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 1280 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1221 Query 168043 ATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATC 168102 || || || |||||| || | ||| ||||| ||||| || | || || || || || Sbjct 1220 ATTATTTCAGGTGCAATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATT 1161 Query 168103 TGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTC 168162 |||||||| ||||| | ||||| ||| | || ||||||||||||| ||||| | || Sbjct 1160 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1101 Query 168163 TTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCGT 168222 | ||||| | | ||| | | || ||||| ||||| ||||||||| | ||| Sbjct 1100 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1041 Query 168223 TTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCA 168282 || ||||||||||| ||||| ||||||||| || || || || || || || | |||| Sbjct 1040 TTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCA 981 Query 168283 GTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATC 168342 || ||| | | |||||| | |||||||| || || ||||||| ||||| || |||||| Sbjct 980 GTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 921 Query 168343 TCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCC 168402 || || || ||||||| |||| | || ||||| |||||||| || ||||| ||||| || Sbjct 920 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCATAACATTCTTATGCACCCA 861 Query 168403 TTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGA 168462 || || ||| | || || ||||| ||||| || ||| | |||||||||||||| || Sbjct 860 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 801 Query 168463 AGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGT 168522 |||||| |||||| | | | || || || || |||| ||||| || | ||| Sbjct 800 TCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 741 Query 168523 TACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGT 168582 |||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| || || Sbjct 740 TACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 681 Query 168583 CGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCT 168642 || |||||||||||||| ||| |||||||| || || || || || |||||| | || Sbjct 680 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 621 Query 168643 GCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAAC 168702 || ||||| || || || || ||||| || || | || | || |||||||| ||| Sbjct 620 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCATTTAAC 561 Query 168703 CTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACC 168762 | || || ||||| |||||||| || | ||||| |||| || ||||| | || || Sbjct 560 TTAAATGGATTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGGCGTGTTATTAATACT 501 Query 168763 TGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCA 168822 ||||| ||| || | ||||| ||| || |||||||||||||||||||| ||||| || Sbjct 500 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 441 Query 168823 CACAACTTCCCACTCGATCTTGCTGCTGCTGAG 168855 ||||||||||| || || || |||| || |||| Sbjct 440 CACAACTTCCCTCTAGACCTAGCTGTTGTTGAG 408 >seq17927 Length=56337 Score = 533 bits (590), Expect = 2e-146 Identities = 731/1019 (72%), Gaps = 12/1019 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | |||||||| || || | |||||||||||| Sbjct 4004 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 4063 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| ||||| | || || ||| |||| |||||| | ||| Sbjct 4064 CTATTGCTCTTTCCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 4123 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| || || ||| | || |||| || |||||||| || || Sbjct 4124 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCC---TATTTAGAAGGTTGCAATTTT 4180 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || ||||| || ||| |||||| | | | | || || || | || || ||| Sbjct 4181 TTAACCGCTGCGGTTTCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGG 4240 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 4241 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 4300 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || || || || ||||| || ||||| ||| | | || |||||| | || Sbjct 4301 GTTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 4360 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||||||| |||||||| ||| Sbjct 4361 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 4420 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || |||||| || || || ||||| || || || ||||||||||| || ||| Sbjct 4421 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 4480 Query 169784 GGAGTATCAGCAATCTTCAGGT---TCCTGTTGTTCCTGCAAGGATTCCACAACTGGACG 169840 || ||| | || || || | | |||| || ||| ||||| || || || ||||| Sbjct 4481 GGTGTAGCGGCTATTTTTCGATTTATCCTCTTTTTC---CAAGGGTTTCATAATTGGACA 4537 Query 169841 TTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCT 169900 ||||| ||||| || |||||||| || || || | |||||| || |||| | ||| Sbjct 4538 TTGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCT 4597 Query 169901 ATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTC 169960 || ||||||| ||| ||||| || || || | |||||| ||||| |||||||| ||| Sbjct 4598 ATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 4657 Query 169961 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 170020 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| Sbjct 4658 CGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTT 4717 Query 170021 TGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTG 170080 ||||| || ||||| || |||| ||||| || || |||||| | ||||| || ||||| Sbjct 4718 TGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 4777 Query 170081 TTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAAT 170140 ||||| || || | ||| | |||| || |||| | | || || ||| | || Sbjct 4778 TTTGTACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAAC 4837 Query 170141 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 170200 || || || || || || || ||||| ||| | ||||| |||||||| ||||||||| Sbjct 4838 CTACGCGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAG 4897 Query 170201 ACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCT 170260 || |||||||| ||||| || || || || ||||| ||||||| ||| |||| || Sbjct 4898 ACTTTCTACACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAA 4957 Query 170261 GATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||||| || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 4958 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574342102992960