Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq11797 659 0.0 seq17927 583 1e-161 >seq11797 Length=28381 Score = 659 bits (730), Expect = 0.0 Identities = 728/967 (75%), Gaps = 2/967 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 ||||| || || |||| ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 1315 Query 163871 CATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 | ||| || |||| || | |||||||| || || || || |||||||||||||| Sbjct 1314 TTCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1255 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | || || ||||| || || || |||||| || |||| | Sbjct 1254 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTAC 1195 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || ||| | || || ||||| ||||||||||| |||||| |||||||||| Sbjct 1194 TTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATG 1135 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 ||| |||||||||||||||| |||| | || | ||||| | | ||| | | Sbjct 1134 GCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1075 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 || |||||||||||||||||||| || |||| | |||||||||||||||||| ||| Sbjct 1074 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 1015 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || |||||||| || | ||||| ||| || |||||||| | ||||| Sbjct 1014 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCA 955 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || |||||||| || ||||||| |||| | || Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || ||||| ||||| || |||||||| || || ||| | || || ||||| || Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || || || ||||| ||||| |||||| |||| |||||| || | | Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | ||||||| || ||||||||||||||||| Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 ||||||||||| || ||||| ||||| ||||| || ||||||||||||| ||| || Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 |||||| || ||||| || || |||||| | || || ||||| || || || || ||||| Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 || || | ||| || || |||||||| ||| | || || ||||| |||||||| || Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | ||| |||| || ||||| | || |||||||| || || | ||||| ||| Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||||||||||||||| || || |||| Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGT 415 Query 164771 TGCTGAG 164777 || |||| Sbjct 414 TGTTGAG 408 >seq17927 Length=56337 Score = 583 bits (646), Expect = 1e-161 Identities = 732/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || || ||||||||||| ||||||||||| || | || ||| Sbjct 4016 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 4075 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||| ||| ||||| | || |||||| | || || || || || | || ||| Sbjct 4076 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 4135 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385 |||||||| || ||||| ||||||||| | || ||| || ||| | || || || ||| Sbjct 4136 TATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTT 4195 Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445 |||||||| || | | | | ||||| | || | || ||||||||||| || ||| Sbjct 4196 TCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAA 4255 Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505 || ||||| | ||| ||| | || || || ||| ||||||| || |||||||| Sbjct 4256 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGC 4315 Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564 |||||||| |||| ||||| ||| | ||||| |||||| | || || ||| || | | Sbjct 4316 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 4374 Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624 || || || ||||| || || ||||||||||| || |||||||||||| ||||| || Sbjct 4375 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 4434 Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684 || || || || |||||||| ||||||| || || || ||| || || || || || Sbjct 4435 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 4494 Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744 || | || | ||||| | ||||| || ||||| ||||| ||||| || |||||||| Sbjct 4495 TTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 4554 Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804 |||||| || || ||| | ||||| | || |||| | || || ||||||| ||| || Sbjct 4555 GATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 4614 Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864 ||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | || Sbjct 4615 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 4674 Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924 ||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| || Sbjct 4675 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 4734 Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984 |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 4735 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 4794 Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044 | | |||| ||| | | || | | ||||| ||| | ||||| || || |||||||| Sbjct 4795 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTT 4854 Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104 ||| ||||| || ||| | ||||| ||||| || || ||||| || |||||||| ||||| Sbjct 4855 TGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAA 4914 Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164 ||||| || || |||||| ||||||||||| |||| | ||||| || ||||| || Sbjct 4915 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 4974 Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | || | |||||||| || ||||| || | || ||||| || Sbjct 4975 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556797319913280