Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14]
18,312 sequences; 192,487,774 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq11797 659 0.0
seq17927 583 1e-161
>seq11797
Length=28381
Score = 659 bits (730), Expect = 0.0
Identities = 728/967 (75%), Gaps = 2/967 (0%)
Strand=Plus/Minus
Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870
||||| || || |||| ||||| || ||| ||||||||||||| || ||| | |||||
Sbjct 1373 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 1315
Query 163871 CATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930
| ||| || |||| || | |||||||| || || || || ||||||||||||||
Sbjct 1314 TTCCGTTTTTATTATCGCATTTATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1255
Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990
||||||| | || || || | || || ||||| || || || |||||| || |||| |
Sbjct 1254 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCAATTATTCCTAC 1195
Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050
|| || || ||| | || || ||||| ||||||||||| |||||| ||||||||||
Sbjct 1194 TTCTGCAGCTATCGGTTTGCATTTTTACCCAATTTGGGAAGCTGCATCCGTTGATGAATG 1135
Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110
||| |||||||||||||||| |||| | || | ||||| | | ||| | |
Sbjct 1134 GCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 1075
Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170
|| |||||||||||||||||||| || |||| | |||||||||||||||||| |||
Sbjct 1074 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGT 1015
Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230
||| || || || || |||||||| || | ||||| ||| || |||||||| | |||||
Sbjct 1014 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCAGTTTTCTTGATCTATCCTATTGGTCA 955
Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290
||| || ||||| | ||||| || || |||||||| || ||||||| |||| | ||
Sbjct 954 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 895
Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350
||||| || ||||| ||||| || |||||||| || || ||| | || || ||||| ||
Sbjct 894 ATTCCAGGCTGAGCATAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 835
Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410
||| ||||| || || || ||||| ||||| |||||| |||| |||||| || | |
Sbjct 834 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAG 775
Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470
|||||||| |||| ||| || || | ||||||| || |||||||||||||||||
Sbjct 774 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAAC 715
Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530
||||||||||| || ||||| ||||| ||||| || ||||||||||||| ||| ||
Sbjct 714 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 655
Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590
|||||| || ||||| || || |||||| | || || ||||| || || || || |||||
Sbjct 654 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 595
Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650
|| || | ||| || || |||||||| ||| | || || ||||| |||||||| ||
Sbjct 594 TACTGCTTTAGGTATTAGTACTATGGCATTTAACTTAAATGGATTCAATTTCAACCAATC 535
Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710
| | ||| |||| || ||||| | || |||||||| || || | ||||| |||
Sbjct 534 TGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 475
Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770
|| ||||||||||||||||| || ||||| ||||||||||||||||| || || ||||
Sbjct 474 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGT 415
Query 164771 TGCTGAG 164777
|| ||||
Sbjct 414 TGTTGAG 408
>seq17927
Length=56337
Score = 583 bits (646), Expect = 1e-161
Identities = 732/1002 (73%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265
||||||||| | | || || ||||||||||| ||||||||||| || | || |||
Sbjct 4016 GATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTT 4075
Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325
|| ||| ||| ||||| | || |||||| | || || || || || | || |||
Sbjct 4076 CCTTGTGCCTATTTTGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGG 4135
Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165385
|||||||| || ||||| ||||||||| | || ||| || ||| | || || || |||
Sbjct 4136 TATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCGGTT 4195
Query 165386 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAA 165445
|||||||| || | | | | ||||| | || | || ||||||||||| || |||
Sbjct 4196 TCTACTCCTGCTAATAGTTTAGCGCATTCGTTGTTGTTACTGTGGGGTCCTGAAGCACAA 4255
Query 165446 GGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGG 165505
|| ||||| | ||| ||| | || || || ||| ||||||| || ||||||||
Sbjct 4256 GGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACGGC 4315
Query 165506 GCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTAT 165564
|||||||| |||| ||||| ||| | ||||| |||||| | || || ||| || | |
Sbjct 4316 GCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-T 4374
Query 165565 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 165624
|| || || ||||| || || ||||||||||| || |||||||||||| ||||| ||
Sbjct 4375 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCT 4434
Query 165625 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAAT 165684
|| || || || |||||||| ||||||| || || || ||| || || || || ||
Sbjct 4435 AATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTAT 4494
Query 165685 CTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATAT 165744
|| | || | ||||| | ||||| || ||||| ||||| ||||| || ||||||||
Sbjct 4495 TTTTCGATTTATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 4554
Query 165745 GATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGT 165804
|||||| || || ||| | ||||| | || |||| | || || ||||||| ||| ||
Sbjct 4555 GATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGT 4614
Query 165805 AGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTAC 165864
||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || | ||
Sbjct 4615 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAAC 4674
Query 165865 TCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGG 165924
||||| |||||||| || |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 4675 TCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGG 4734
Query 165925 TATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 165984
|||| ||| ||||| | ||||| |||||||||||| | ||||| || || | ||
Sbjct 4735 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGG 4794
Query 165985 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 166044
| | |||| ||| | | || | | ||||| ||| | ||||| || || ||||||||
Sbjct 4795 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGCGCCTATGACTT 4854
Query 166045 TGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAA 166104
||| ||||| || ||| | ||||| ||||| || || ||||| || |||||||| |||||
Sbjct 4855 TGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACTAAAAA 4914
Query 166105 CATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAA 166164
||||| || || |||||| ||||||||||| |||| | ||||| || ||||| ||
Sbjct 4915 TATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 4974
Query 166165 CTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206
| || | |||||||| || ||||| || | || ||||| ||
Sbjct 4975 CCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 5016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556797319913280
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